KEGG   Vibrio diabolicus: AL552_25185
Entry
AL552_25185       CDS       T05332                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
vdb  Vibrio diabolicus
Pathway
vdb03030  DNA replication
vdb03410  Base excision repair
vdb03420  Nucleotide excision repair
vdb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vdb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AL552_25185
   03410 Base excision repair
    AL552_25185
   03420 Nucleotide excision repair
    AL552_25185
   03440 Homologous recombination
    AL552_25185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vdb03032]
    AL552_25185
   03400 DNA repair and recombination proteins [BR:vdb03400]
    AL552_25185
Enzymes [BR:vdb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AL552_25185
DNA replication proteins [BR:vdb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AL552_25185
DNA repair and recombination proteins [BR:vdb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     AL552_25185
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AL552_25185
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_5
Other DBs
NCBI-ProteinID: AVF96698
LinkDB
Position
1:3253028..3255814
AA seq 928 aa
MASIPENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAV
VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT
LAHQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLIDNK
ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNELLEGGSGSVE
AVELAGSAQMSSSHAEMETSAVTIDRSQYETILDEETFNAWLDKLQTAELFAFDTETDNL
DYMLANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLGQLKPILEDAAKAKVGQNL
KYDASVLARYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGK
NQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIE
RTGVFIDEMKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKK
TPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQ
AVTATGRLSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQ
ALLDAFRDGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPR
GEAQAYMDKYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAER
AAINAPMQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKV
QKLMESAAELKVPLVAEAGHGDNWDQAH
NT seq 2787 nt   +upstreamnt  +downstreamnt
atggcaagtattcctgaaaatccgttgatccttatcgacggctcttcttacctatatcgc
gcttttcacgcctacccgggcaccatgagtaatggtgaaattccaactaatgccgtttac
ggtgtcgtgaacatgttacgcagcatgatgcgtcagtttgcgtctgagcgcatcgcggtg
gttttcgatgcgaaaggaaaaaccttccgtgatgatatgtatgcagaatacaaagctaat
cgtccgccaatgccggatgatctgcgttgccaaattgaaccattgcacaatgttattcgc
gcgatgggtttaccactgatctgtgttcctggtgtcgaagcggatgacgtcattggtacg
ttggcgcatcaagcatcacaaaagggcatgcctgtattgatcagtactggtgataaagac
atggcgcagttggtggatgataatattaccctgatcaacaccatgacgaacgtcgtgatg
gatcgtgaaggtgtggttgaaaagtttggcattccacctgagttaatcatcgactaccta
gcgctgatgggcgataaagtagataacatccctggtgtaccaggcgtgggtgacaaaaca
gcgaccgcactactgcaaggtattggcggtctgactaagctgtatgaaaatctcgatgac
attgctgcgcttggcttccgtggttctaaaaccatggcgaagaagctcatcgataacaaa
gaaaatgccatgctgtcgtacgagctcgcgaccattaaattggatgttgaacttgaagaa
acgccagaatcactgctgaaagcggaaccaaataaagacgaactagtgaagttgtatggt
caactgacgtttaaatcttggttgaacgagctacttgaaggtggttctgggtcggtagaa
gctgttgagcttgctggctctgctcaaatgtcttcttctcatgctgagatggaaacttcc
gcagtgacaatcgaccgtagccaatatgaaacgattctggatgaagaaaccttcaatgcg
tggctagacaaacttcaaacggccgagttgtttgcgtttgatacggaaaccgacaaccta
gattacatgctagcgaacctggttggtttgtcattcgctgtcgatgaaggcattgccgct
tatgtgcctgttgcacatgactacctagatgcacctgaacagcttgatcgtgattgggtt
ctaggacagctgaagccaattcttgaagatgcagcgaaagcaaaagttggtcaaaactta
aagtatgatgcgtctgtattggctcgttatgatattgagctaaaaggtatcaagcacgac
acgatgttggaatcgtacatttacaacagtgtcggcggtaaacacgatatggacagcttg
gcgcttcgcttcctacaacacagctgcatttcttttgagcaaattgcaggtaaaggcaaa
aatcagctgacgtttaaccaaatcgagttggaacaagcatcgccatacgcggcagaagat
gcggatgtgacccttcgtctgcacaatcgcttgtttgcgaatatcgagcaggatgaaagc
ctgaagacagtgtacgaagagattgaaatgccgttggtgccagttctttcgcgcattgaa
cgcaccggggtctttattgacgaaatgaagctgagtgcgcagtcggtagagattaccgct
cgccttgatgagcttgaaaagaaagcgtatgaaattgcagagcaagagttcaacatgaac
tcgccaaagcaattacaagccatcctatttgaaaaaatgggtttaccggtggtgaagaaa
acgccatcaggtacaccatcgacgaatgaagaagtgctacaagagcttgccttagattac
ccactgccaaaattgattttggaatatcgcggtttggcgaagcttaaatcgacgtacacg
gacaagctgccgaagatgatcaacccaacaacagggcgtgtgcatacttcttaccatcaa
gcagtaaccgcaacaggtcgtctatcttctaccgatccgaacttacaaaacattccaatt
cgtaacgaagccggccgtcgtattcgccaagcgtttgtcgcaccatctgggcataagatc
ttagcggtcgactactcgcaaatcgaactgcgcatcatggctcacctttctggcgaccaa
gcgttattagatgccttccgtgatggtaaagacattcacgcggcaactgcggcagaaatt
atgggtctggatattgaacaagtatcgagcgagcagcgtcgtcgtgctaaagccgttaac
ttcgggcttatctatggcatgagtgcatttggtttggcgaagcagcttggtatccctcgc
ggcgaagcacaagcctacatggataaatactttgagcgttaccctggcgttatgcagtac
atggaagacacgcgcagcacggctgcagataagggctatgttgaaacgatttttggtcga
cgtttgcatttaccagaaatcaaatcgcgcaacgggatgcgtcgtaaagctgctgaacgt
gcggcaatcaacgcaccgatgcaaggtacagctgcggacatcattaagaaagcgatgctg
ttggttgatcagtggattcaggaagaaggcaatggccgtgtgaagttgttaatgcaagta
cacgatgaattggtctttgaagttgaagagtcatcattgtccgaaattgaaagtaaagta
cagaaattgatggaatctgcagcagagctaaaagtaccattggttgcagaggcagggcac
ggtgacaactgggatcaagctcattag

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