Varroa destructor (honeybee mite): 111253741
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Entry
111253741 CDS
T07383
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
vde
Varroa destructor (honeybee mite)
Pathway
vde03015
mRNA surveillance pathway
vde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vde00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111253741
09123 Folding, sorting and degradation
03018 RNA degradation
111253741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vde03019
]
111253741
03041 Spliceosome [BR:
vde03041
]
111253741
Messenger RNA biogenesis [BR:
vde03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111253741
mRNA cycle factors
Stress granule specific factors
111253741
Spliceosome [BR:
vde03041
]
Complex C
Other components
Complex C specific factors
111253741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_7
RRM_5
RRM_RdRP1_2
RRM_3
DUF3987
ApbA_C
Motif
Other DBs
NCBI-GeneID:
111253741
NCBI-ProteinID:
XP_022669358
UniProt:
A0A7M7L317
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MNSGGGNYTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMITRRSLGYAYVNFH
QPGDAERALDTMNFEPLKGRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFS
AFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAIGKVNGMLLNEKKVFVGKFVPRSER
ERMMGDKARLFTNVYVKNFGEELDDDKLKEMFEAYGKITSARVMTDPSGKSKGFGFVSFE
NPEAAEQAVKELNDKEIGNGKKIYVGRAQKKAERQADLKRKFEQLKIERMNRYQGVNLYV
KNLDDVIDDERLRREFAPYGTITSAKVMMDTTGTRSKGFGFVCFSSPEEATKAVTEMNGR
IIVQKPLYVALAQRKEDRRAHLSSQFVQRFAGVRMPFNQLPFSQAPASYFVPAMQQPRAY
FPSGSVAGGVRPAQRWPAGQQIRVGGQYPLPNQQIAATATFPRAQRPLMPGQVAAGHGAP
HAAGPASARSAALNAARPITGQPLPGGASTGGRVSGRIGAGGAPQQAAGARANYKYTSTV
RNPQPPSGAAGAAGAASGALGGNAANAVLVQGQEPLTTQMLAEASPREQKQMLGERLFPL
IYNMHSDLAGKITGMLLEIDNSELLHMLEHNESLRAKVDEAVAVLQAHQAKEEIARAAPA
QAAAPAPMPAAPSDQPKTMAEVVAGKKE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgggcggaggtaactacacgatggcgtctctgtacgtcggggacctcgatcca
gatgttacggaatcaatgctgttcgagaagttctgccaggcaggacccgtgctttcgatc
cgggtatgtagagatatgattactcgccggtcgctcggctacgcatatgttaactttcac
cagcctggcgatgccgagcgggcactcgatacgatgaatttcgaacccctaaagggccgt
cctatgcggatcatgtggagccaacgggacccgtccctgcgcaaatctggtgttggcaac
gtgttcatcaagaacttgcacaaagatatcgacaacaaggccatcttcgatacgttctcg
gcctttggtaacatcttgtcgtgtcgagtggccactgatgaacaaggcaactcccgaggc
tacgggtttgtgcacttcgaaaccgaggaagcggccaatgaggctattggcaaggtaaat
ggaatgttgctcaacgagaaaaaggtgttcgtaggcaagttcgtgccgcgttctgaacgt
gaacgtatgatgggcgataaagctcgtctcttcaccaatgtgtacgtgaagaacttcggt
gaggagctggatgacgataagcttaaggagatgttcgaggcttatggtaaaattacctcg
gcccgcgttatgaccgatcccagtggcaaatcgaaaggattcggttttgtaagcttcgaa
aaccctgaggccgccgaacaggccgtcaaggagctgaacgataaggaaataggaaatgga
aagaagatctacgttggccgcgctcaaaagaaggccgaacgtcaggccgaccttaagagg
aaattcgagcaactgaagatcgagcgcatgaaccgctaccagggtgtgaacctatacgtg
aaaaatctagacgacgtcattgatgacgaacgtctgcgccgggagttcgctccctacgga
acaattacctcagccaaggtgatgatggacacaacaggaacccgctcaaagggtttcggt
tttgtctgcttctcttcccctgaggaggccacgaaggctgtgacagaaatgaacggccga
attatcgtgcagaagcctctatacgtcgccctggctcagaggaaggaggaccgtcgcgct
caccttagctcacagttcgtccagcgattcgccggcgtacgcatgccattcaaccaactg
ccattcagtcaggcaccggcaagttacttcgtaccagctatgcaacagcctcgagcctat
ttccccagcggcagcgtcgctggtggcgtgcgacctgcccaacgttggccagccggacag
caaatccgtgtcggcggccagtacccattgccgaaccagcagatcgcggcaaccgccaca
ttcccacgtgcacagcgcccacttatgcctggacaggtagctgcaggccatggagctcct
catgccgctggaccagcctcggcccggtccgcagccctcaacgccgcccgacccatcact
ggacagcctttgcccggtggtgcgagcactgggggacgcgtgagtggccggatcggcgca
ggtggagcaccccagcaggctgccggagcccgtgccaactacaagtacacgagcactgta
cgtaacccacaaccaccgagtggggcggcaggtgccgctggagccgctagtggcgctctc
ggtggcaatgcagcgaacgccgtgctcgttcaaggccaggaacctcttactactcaaatg
ttggctgaagcatcaccccgtgaacaaaagcagatgcttggagagcgcctattccctctg
atttataatatgcactcagatctcgctggaaagatcactggaatgcttttggaaattgac
aactccgagcttctccacatgctggagcacaatgaatcgctacgtgcgaaagttgacgaa
gccgttgctgtgctccaagcccaccaggccaaggaagagatcgctcgggctgcgcctgcc
caggctgctgcccccgcaccgatgcccgcagctccctctgaccaaccgaagacgatggcc
gaagtcgtagctggcaagaaagagtaa
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