Varroa destructor (honeybee mite): 111253868
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Entry
111253868 CDS
T07383
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
vde
Varroa destructor (honeybee mite)
Pathway
vde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111253868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vde03019
]
111253868
Messenger RNA biogenesis [BR:
vde03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111253868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
PIN_4
CSD2
Rrp44_S1
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
111253868
NCBI-ProteinID:
XP_022669740
UniProt:
A0A7M7KVZ5
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MLTQKVFIRKTKRGNILKIVREHYLREDIGCGSGACCKCNDNCAKPLQKDFKSASEVVSY
PHYVVPDTNIVFHQMDVLKDDSFRNVIVAQTVIQELRHRHAPAYNAVREVMANQSRHFHC
FVNEHHKDTYVERLPGESANDRNDRAVRRVVHFLQNHFNEQGLAIKVVLITDNRACLALA
KKEGLTAFTLKEYVGGMNKPELLDKIVIGQDGSGEGDPVASKKFMYPEHLTAAALQSGIR
AGRLRAGKFMASRENYLEGYVCFGDVDNEDEADRVLIQGLMNLNRSVQDDTVVVELLAES
EWATPSSVVLEDEVEEADKVDEEDDDGDEARRERALERVLRESKTEKGVKKMPTAKVVGI
LRRKWRPYCGILAPSAIKEATKHLFVPAEKKIPKIRIETRQAPTLAGKRIVVAIDSWPRH
SRYPLGHYVRTIGEIGDRQTENEVLLLEHDIPHQPFSTAVLNCLPKMPWIVTSEDEKQRV
NLRDVPICSVDPPGCTDIDDALHARHLPNGNIEVGVHIADVSHFIRPGTAIDKEAADRGT
TVYLVDQRIDMIPDLLSSNLCSLRSKVDRFAFSAMFEMTPDAKIVSTHYHKSIIRNKASL
TYAEAQAMIDDKGRNDDVTQGLRLLNVLAKKLKSERIANGALGLASTEVRFQIDMETHDP
IDVKTKELLETNSMVEEFMLLANKSVAERIYRELSHCAILRRHPIPPVGNFDPLVRAAAT
RGFTVKVTSGKELADSLDAADEPNDPFFNTMLRMVATRCMTQAIYFCAGTVAEADFLHYG
LALPYYTHFTSPIRRYADLMVHRLLAVTISADATYPDLLDKHRSQVLCNNLNYRHKMAQY
AGRASMSLYTQRYFREKCAYEEGYILFVRENALQILLPKFGMECTLYVKDKPGTAQPRVT
IPFTYDEERCTQAAKGVVLRQFERVTVRVSLDRSNIQHQKVVVDLVDPFIPGYSIEQVKK
EKVQFNEENPTLEKNPAKSEAAARKQKGKVAKTNK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgttaacacaaaaggtgtttatacgtaagactaagcgaggcaatattctgaagattgtt
agagagcactaccttcgcgaggatattggctgcggttcgggagcatgttgtaaatgcaac
gataattgcgcgaaacctctgcaaaaagactttaaaagtgctagtgaagtggttagctac
cctcattatgttgtgccggatacgaacattgttttccatcagatggatgtcctaaaggac
gattctttccgcaacgtaattgtcgctcagacggtgatccaggagttgcgacatcgtcac
gcgccagcgtacaatgccgtccgagaagtcatggctaatcaaagcagacatttccactgc
ttcgttaatgaacatcataaggacacttacgtggaacggcttccaggagaatctgctaat
gaccgaaatgatcgagccgtcaggcgtgttgtccatttccttcaaaatcatttcaatgaa
cagggattggccattaaggtcgtccttataaccgataatcgagcgtgcttggctttggcg
aaaaaagagggtttaacagctttcaccctcaaggagtacgtgggaggaatgaataagccg
gaacttttggacaagattgttattgggcaggatggatccggagagggagatcctgtagcc
tcaaagaagtttatgtaccctgaacatctgacagcagcagctctgcagtctggaataaga
gctggacgacttcgcgcaggaaaattcatggcgtcacgagaaaattatcttgaaggctat
gtatgttttggagatgtagacaatgaagatgaggcagatagggtgcttatacagggcctc
atgaatcttaacaggtccgtacaagatgacactgttgtagtagagttgctagccgagtcc
gaatgggcaactccctcatccgttgtacttgaggatgaagtcgaggaggcagataaggtc
gatgaagaagacgacgatggtgatgaagctcgtcgagaaagagctcttgaacgggtcctg
agggaaagtaaaacggaaaaaggagtgaaaaaaatgccgacagcaaaggtggtcggaatc
ttgcgacgtaagtggcgcccctactgtggaatccttgctcctagcgcaatcaaggaggca
actaagcatctattcgtgccagccgaaaagaaaatcccaaagattcgaatcgaaacacgc
caggcgccgactctcgcaggcaaaagaattgttgtcgccatcgacagttggcctcgtcac
tcaagatatccattgggccattatgtgcgcacgataggagaaattggcgatcgacaaacg
gagaatgaagtccttctgcttgaacacgacattccgcatcagccgttctcaacagctgtt
cttaactgcttaccgaagatgccttggatagtcacttccgaggacgaaaagcagcgtgta
aaccttcgagacgtgccaatttgctctgtcgaccccccaggctgcacagatatcgacgat
gctttgcatgcgcgtcatttgccgaatggaaacatcgaagttggagttcatattgccgac
gtatctcactttattagaccaggaacggccattgacaaagaggccgcggatcgaggaacc
acagtttatctcgtagatcagcgcatcgatatgattcctgatttgctcagctcaaatcta
tgctcacttcgttccaaagttgatcgttttgctttttcggcgatgtttgagatgacgcct
gacgctaaaatagtatcaactcactaccacaaaagtataattcgaaacaaggcatcactc
acatatgctgaggctcaagcaatgattgacgataagggccgaaatgatgacgttacccaa
ggtcttcgcttactaaacgtgttggcgaaaaagttaaaatcagaacgaatcgccaatgga
gcactgggtttggcgtcaactgaagttcggtttcaaattgatatggaaacgcacgatccc
attgacgtgaagactaaagaacttctagaaactaattcaatggttgaagagtttatgtta
ttggcaaacaagtctgtggctgaacgaatttatcgtgaattatctcattgcgccattctg
cgacgacatccgattcctcctgtgggtaactttgatcctctcgtaagagctgccgccaca
cgtggatttaccgtaaaggtgacaagtggaaaggagctggctgactcactggatgctgca
gacgagccgaacgatccgttctttaacacgatgttacgaatggtagcaacgaggtgtatg
actcaagccatatacttttgtgcaggtacggtcgccgaagccgatttcctgcactacgga
ttggcgttgccgtactacacgcattttacttcaccaatccgaagatacgccgatttgatg
gtacatcgtttactcgccgtaaccatatccgctgacgccacctatcctgatcttctggat
aagcatcgctcacaagtactttgcaacaatctcaattaccgtcataagatggctcaatat
gcaggaagagcctctatgtcactgtacacacagagatatttccgagaaaagtgtgcctat
gaagagggctacattctgtttgtgcgcgaaaacgccctacagattcttctgccaaagttt
ggtatggaatgcacgctctatgtaaaagacaagccaggtactgctcaaccaagagttacg
atacctttcacctatgatgaggagcgctgcacgcaagccgctaagggagttgttctccgc
caatttgagcgtgtcacagttcgtgtttcactcgatcgaagcaatatacagcaccaaaag
gtcgtcgtggacttagtcgatccgttcattccagggtatagtattgaacaggtgaagaaa
gaaaaagttcagtttaatgaagaaaaccctactttggaaaagaatccggcgaaatccgaa
gcagcagctcgaaaacagaagggaaaagtcgcaaaaactaacaaataa
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