Vulcanisaeta distributa: Vdis_2242
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Entry
Vdis_2242 CDS
T01313
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vdi
Vulcanisaeta distributa
Brite
KEGG Orthology (KO) [BR:
vdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vdi03016
]
Vdis_2242
Enzymes [BR:
vdi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Vdis_2242
Transfer RNA biogenesis [BR:
vdi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Vdis_2242
Prokaryotic type
tRNA splicing ligases
Vdis_2242
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADN51610
UniProt:
E1QQC3
LinkDB
All DBs
Position
complement(2094238..2095692)
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AA seq
484 aa
AA seq
DB search
MVPPLKKISDYVWEIPKGYKPCMKVPARIFADETLLEKMKTDMTLEQAANVACLPGIYKY
SIALPDAHQGYGFPVGGVAAMDMEQGVVSPGGIGYDINCGVRLLRTNLTEKDVRPKLREL
VDTIFKLVPAGVGETGLLKLSFGDLDKVLDEGVDWALSKGYGWGDDKNFIEEFGHYEGAD
SSKVSQRAKERGKDELGTTGSGNHFIEIQVVNKIFDANLAKRLGIEQEGQVMVLIHTGSR
GLGHQVATDYIRVAENKMKQWGLFLPDRELASMPLSTREAQDYLAAMKAAANYAWTNRQI
ITHWVREAFRRVFGKDPDKLGLEIVYDVAHNIAKIEDHVIDDEGHVRRVLVHRKGATRSF
PAGRPEIPPKYRDIGQPVLIPGSMGTASYVLIGLPTSFQVTFGTAPHGAGRTLSRSAAVR
MLPPNKVRSALENRGIIVRSAESEIISEEAPEAYKNVDKVAEVAELTGMARRVSRHVPIG
VVKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggttccaccgttaaagaaaataagcgattatgtatgggagataccgaaggggtataaa
ccatgcatgaaggtgccagctaggatattcgccgatgagaccctacttgagaaaatgaag
acagacatgacactggagcaggcagccaacgtcgcatgcctaccaggcatttacaagtac
agcattgcactgccggatgcgcaccagggctatggattcccagtgggcggtgtggctgcc
atggacatggaacaaggtgtagtgagcccaggaggaattggctacgatattaattgtggc
gtgagacttcttaggacaaatctgacggaaaaagacgttaggcctaagttaagggagctc
gtggacacgatattcaagttagtccccgctggcgttggtgagactgggttgcttaagctg
tcctttggtgacttggataaggtgcttgatgagggtgttgattgggcgttgagtaagggc
tatggttggggtgatgataagaacttcattgaggagtttgggcattatgagggtgcggac
tcgagtaaggttagtcagagggctaaggagaggggtaaggatgagcttggtaccactggc
agtggcaatcacttcattgagattcaggtcgttaataagatattcgatgcaaacctagcc
aagaggcttggtattgagcaggagggtcaggtaatggtcctaatacacaccggtagtagg
ggccttggtcaccaggtcgccactgactacataagggttgcggagaataagatgaagcag
tggggcttattcctgccggacagggagttggcgtcgatgccccttagcactagggaggct
caggactacctggcggccatgaaggccgcggctaactatgcatggacaaataggcaaata
ataacgcactgggttagggaggccttcaggagggtctttggtaaggacccggacaagctt
ggccttgagattgtctatgacgttgctcataacatcgctaagattgaggatcacgtaatt
gatgatgagggtcacgtcaggagagttctcgtgcataggaagggggctacgaggtcattc
ccagcgggtaggccggagataccgcctaagtatagggatattgggcagcctgtcctgata
cccggtagtatgggtacggcatcctacgtattgattggtttaccaacgtcattccaggta
acctttggcacagcaccgcatggggcaggtagaacgttgagtaggtctgccgccgttagg
atgctaccacctaataaggttaggagtgccttagagaataggggcatcatcgtgaggtcc
gccgagagtgagataatatctgaggaggcgcctgaggcgtataagaacgttgataaggtt
gccgaggtagccgagttaactggaatggctaggagggtctctaggcacgtgcccatcggc
gtcgttaagggataa
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