Veillonella dispar: NCTC11831_00680
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Entry
NCTC11831_00680 CDS
T05848
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
vdn
Veillonella dispar
Pathway
vdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11831_00680 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vdn03019
]
NCTC11831_00680 (rny)
Messenger RNA biogenesis [BR:
vdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11831_00680 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
HDOD
PetM
KH_2
Motif
Other DBs
NCBI-ProteinID:
VEG93255
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Position
1:731353..732897
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AA seq
514 aa
AA seq
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MRLILEYSLIAVVMVLIGLGVGYFLRKNIAEGKLNQAEQEAARIIANGERTAESKKKEAL
LEAKEEIHKLRSDVERENKDRRSELQRMERRILQKEESLDKKLDNIEHKEEALHRKEADL
AQSREKIEALYEKQMAELERISGMTFEEAKNILLTNVEQEIRHETAIMVKEMEQQAKDDA
EKKAKEIISSAIQRCAADHVAETTVSVVALPNDEMKGRIIGREGRNIRALETLTGIDLII
DDTPEAVILSGFDPIRREVARIALEKLIVDGRIHPARIEEMVGKARKEVDQTIKEAGEQA
TFEADVHGLHPEIVKILGRLKYRTSYGQNVLKHSIEVSHLAGLMAAELGCDVTLAKRGGL
IHDIGKALDRELEGSHVQIGVDVARKYRESAAVINCIGAHHGDEEFQSVEAVLVAAADAI
SAARPGARRETLENYLKRLSKLEEIAESFEGVEKCFAIQAGREIRVVVKPDKIDEAESTL
LVRNIVKRIESELEYPGQIKVVIIRETRVVDYAK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
gtgagactgattttagagtatagtctaattgcagtggtaatggtactgattggactaggg
gtaggctattttttaagaaaaaatattgctgaaggaaaactgaatcaagctgagcaagag
gctgcacgtatcatcgctaatggtgaacgcacagctgagtctaaaaagaaagaagcttta
ttagaagcgaaagaagaaattcataagctccgttctgatgtagaacgagaaaataaagat
cgccgttctgaacttcaacgtatggaacgtcgtattcttcaaaaagaagaatctttggat
aaaaaattagacaatattgagcacaaagaggaagctttacatcgcaaagaagctgactta
gcccaaagccgtgaaaaaattgaagcattgtatgaaaaacaaatggcagaattggaacgt
atttccggtatgacatttgaagaagctaagaatatcttgttaacgaatgtggaacaagaa
attcgtcatgaaacggcgattatggttaaggaaatggagcagcaagctaaggatgacgcg
gagaaaaaagcaaaagaaattatctcctctgctatccaacgttgcgcagctgaccatgta
gcggagactaccgtatccgtagtggcattacctaatgatgaaatgaaaggtcgcattatt
ggtcgtgaaggccgtaatattcgcgcacttgaaacattaacaggtattgacttgattatc
gatgataccccagaagcagttattctttctggcttcgatccaattcgtcgtgaagtggct
cgtattgctttggaaaaattgattgttgacggtcgtatccatccagctcgtattgaagaa
atggttggtaaagctcgtaaagaggttgaccaaactattaaagaggctggtgaacaagcg
acatttgaagctgatgttcacggcttacatcctgaaattgtaaagattttaggtcgtttg
aaatatcgtactagttacggtcaaaacgttttgaaacattctattgaagtatctcattta
gcaggtttgatggcagctgaactaggctgtgatgtaacattggctaaacgaggtggttta
atccatgatattggtaaagcattggaccgcgaacttgagggttctcatgttcaaatcggt
gttgatgtggctcgtaaatatcgtgaaagtgcagcagtaattaactgcattggcgctcat
catggtgatgaagagttccaatctgtagaagctgtattagttgcagctgctgatgctatc
tctgcggctcgtcctggagcacgtcgagaaacattagaaaactacttgaaacgtttatct
aaattggaagaaatcgctgaatccttcgaaggcgttgaaaaatgctttgctattcaagca
ggtcgtgagattcgcgttgtagtaaaaccggataagattgatgaagctgagtctacatta
ctcgttcggaatatcgtaaaacgcatcgagtctgaactcgaatatccaggccaaattaag
gtcgtaattattcgtgaaactcgcgttgtggattacgcaaaataa
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