Veillonella dispar: NCTC11831_00888
Help
Entry
NCTC11831_00888 CDS
T05848
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vdn
Veillonella dispar
Pathway
vdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11831_00888 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vdn03019
]
NCTC11831_00888 (rnr)
03016 Transfer RNA biogenesis [BR:
vdn03016
]
NCTC11831_00888 (rnr)
Enzymes [BR:
vdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC11831_00888 (rnr)
Messenger RNA biogenesis [BR:
vdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11831_00888 (rnr)
Transfer RNA biogenesis [BR:
vdn03016
]
Prokaryotic type
tRNA degradation factors
NCTC11831_00888 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
S1_RRP5
OB_HELZ2
CSD
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-ProteinID:
VEG93456
LinkDB
All DBs
Position
1:945639..948002
Genome browser
AA seq
787 aa
AA seq
DB search
MKKKVLDFYKSIQPHAYHIEDAAMDNHIRGGKDLEMFIRSAKMLAREGVLTSSRPDVYQY
AEQQHEEYEGIYKGYRKSYGFVIMPDDEDIYVAEQNKGTAMHNDKVRVRVVPSNYTKHKR
EGVIVDVIERANETVVGTYDRQQHFGFVIPDDERIGTDIFVDLKNTLDARSGAKVLVKIT
KWPEGDKKPEGIITEILGYKGDVGLDINCIMANHKIPFNFPDDVIKASQKIDTVIHEDSD
RWDLRDVQMVTIDGEDAKDLDDAVSGRKLPNGNYELGVHIADVSHYVTSGQAIDNEAYKR
GTSVYLVDRVVPMLPEVLSNGICSLNAHEDRYAMTCMMEINKDGKVVHYRIRPSIIHVGR
RCSYKEVYKALEENIIPDDLQDFMPMLRDLAEISKILNAMRRRRGALDFDFPEYKVLLDH
DGTPLRIVKRDRTMAERLIEECMLIANETVATHLEHTHRTSVYRIHENPSEEKLDLFQKV
LNYLGQNLVLSTDGVTPRDFQKILDVVKGQDIEQVAQIMTLRSMQQAKYSTNNVGHFGLA
STCYTHFTSPIRRYPDLMVHRLLKADMHWKNGYSKRDVDEAFLAGAVEHSSIQEQVATEA
ERDTVDLKKTQYMVPFVGEVFEGTISSITSFGMFVELENGIDGLVHMSMMNDDYYFFDEE
HFVLVGKRTGKTYHLGEKVTVTLVKADVEKKQIDFVLGEVNNLMAIQEQLQNGSDYASSR
DGYGSRKGRKSSGKSSKKSSRRDSNKSSHSKYDAFSKKTSKGKSSRKKSNKTTKRSQSKK
SKSKRKR
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaagaaagtattagacttttataaatctatacaaccacatgcatatcatattgaa
gatgctgctatggataatcacattcgaggtggtaaggatcttgagatgtttattcgttca
gcaaaaatgcttgctcgagaaggggtgctaacatcttctcgacctgatgtatatcaatat
gcagaacaacaacatgaagaatatgaaggtatttataagggctatcgtaagtcgtatggc
tttgtgattatgcctgatgatgaagatatatatgtagcagaacaaaataaagggactgct
atgcacaatgataaggttcgagttcgcgttgtaccgtctaactatacaaagcataaacga
gaaggcgtcatcgttgatgttattgaacgagctaatgaaactgtagtaggtacctatgac
cgacaacaacactttggctttgttatccctgatgatgagcgtatagggacagatatcttt
gtagatttaaaaaatacattagatgctcgtagtggcgcaaaggtactagtcaaaattaca
aaatggccggaaggtgataaaaagccagaaggtattataacggaaattcttggctataaa
ggtgatgtaggtctcgatattaactgcatcatggcgaatcataagattccatttaatttc
ccagacgatgtcattaaagctagccagaaaattgatactgtgattcatgaggattctgat
cgttgggaccttcgtgatgtacagatggttaccatcgatggggaagatgcaaaagattta
gacgatgctgtgagtggtcgtaaattaccaaatggtaattatgaattaggcgtacatatt
gcagatgtaagtcattatgtaacatctgggcaagccattgacaacgaggcctataaacgg
gggacatctgtatatttagttgatagagtagtaccgatgttaccagaggttttatccaat
ggtatttgtagtttaaatgctcatgaagaccgttatgctatgacgtgtatgatggaaatt
aataaagatggtaaggttgtacattatcgcattcgaccatctattatccatgtaggccgt
cgttgtagctataaagaagtgtataaggcgctggaagaaaatattattcctgacgattta
caagactttatgcctatgcttcgcgatttagcagaaatctctaaaattcttaatgcaatg
cgtcgccgtagaggtgcattggactttgattttcctgagtacaaggtattacttgatcat
gatggtacaccgttgcgcatcgtaaaacgagatcgcaccatggcagaacgacttatcgaa
gaatgtatgctcattgccaatgaaacagtggctacacatttagagcatacacaccgtaca
tcggtatatcgtattcatgagaatcctagtgaggaaaaactagatttattccaaaaggtg
cttaattatttaggtcaaaacctagttctaagtactgatggtgtgacaccacgagatttc
caaaaaatcttagatgtagtaaaagggcaagatattgagcaagtagctcaaattatgacc
ttgcgttccatgcagcaagctaaatatagtaccaacaatgtgggtcattttggcttggca
tctacatgttatacgcatttcacatctcctattagacgatatcctgacttaatggttcac
cgccttttaaaagcagatatgcattggaaaaatggttattctaaacgggatgtagacgaa
gcgttcttagctggagctgttgaacattcttctatacaggagcaagtagctactgaggct
gaacgagatacagtagatcttaaaaagactcaatacatggttccatttgtaggggaagtc
tttgaaggaactatttctagcattacatcttttgggatgtttgtagaattagaaaacggt
atcgatggccttgtgcatatgagcatgatgaatgatgattactatttctttgatgaagaa
cattttgtacttgtaggcaaaagaacaggtaaaacctatcacttaggtgaaaaggtaact
gttacattagtaaaagccgatgtagaaaagaaacagatcgactttgtacttggtgaagtc
aataacctaatggctatacaagaacaattgcaaaatggttctgactatgcaagtagtcga
gatggctatggtagtcgaaaaggtcgtaaatcttcaggaaaatccagtaaaaaatcttca
cgacgcgatagtaataaatctagtcattctaagtacgatgctttcagtaaaaaaactagt
aaaggcaaatcaagtcgtaagaagtctaataaaacgactaagcgcagtcaatctaagaaa
tctaaaagtaaacgtaaacgatag
DBGET
integrated database retrieval system
