Veillonella dispar: NCTC11831_00941
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Entry
NCTC11831_00941 CDS
T05848
Symbol
pcrA_1
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vdn
Veillonella dispar
Pathway
vdn03420
Nucleotide excision repair
vdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11831_00941 (pcrA_1)
03430 Mismatch repair
NCTC11831_00941 (pcrA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vdn03400
]
NCTC11831_00941 (pcrA_1)
Enzymes [BR:
vdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11831_00941 (pcrA_1)
DNA repair and recombination proteins [BR:
vdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11831_00941 (pcrA_1)
MMR (mismatch excision repair)
Other MMR factors
NCTC11831_00941 (pcrA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
AAA_14
ResIII
DUF3226
DEAD
DUF3553
Motif
Other DBs
NCBI-ProteinID:
VEG93508
LinkDB
All DBs
Position
1:994017..996206
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AA seq
729 aa
AA seq
DB search
MNSLLTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFT
NKAAKEMKSRVEGLVGDVANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAV
IKAALKALNLDDKYYPVGAMIAAISDAKNKLLFASDFRKQARDFYQQKVADVYEYYEREL
RKNNALDFDDLLLVAVKLLQSNEAVLDKYSKRFRYVMIDEYQDTNHAQYLLAKLLASHWK
NIAVVGDADQSIYAWRGADIQNILDFEKDYPNCTSIKLEQNYRSTKIILDAANAVIENNE
GRPKKNLWTDKTEGAKIQHFIAQSEHEEAAFIGDTIAKKHDIHGVPYGDMAILYRTNAQS
RVLEEALIKRALPYTMVGGTKFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINVPKRSIGA
TTVAKLQDYARANGTSLFMTLTQLHLVDTIKGKTKEKLEEFGILIFTLVAEMEDRTVLDI
LESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDFQDTNPTGTVEDFLEQVALVND
VDSFEQEESKVTLMTLHAAKGLEFPIVFLGGLEEGLFPHSRTLMNPEEIEEERRLAYVGI
TRAEKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMS
VTSRPVTKPIVRNEVIADWKIGDTAIHSKWGNGKVINVAGEGAGMKLTIEFPTQGVRVVM
AKFAPVKKG
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaattcattactaacaggtttaaataaagagcaacaacaagccgttcaacatacggaa
ggccctttattgattttagccggtgccggatctggtaaaacaaaggttttaactgttcgt
attgcacatttattagctcaaggtgttaatccttatgaaattttagctattacctttacc
aataaagcggctaaagagatgaaaagtcgtgtagaaggtcttgtaggggatgtagccaat
cgtatttggctcagcacattccatagcttttgtgcgaaattcttgcgctttgaattagat
aacttcttgggttataacagtaattttacaatctatgatacatctgactctcaagccgtt
attaaggcggcgttgaaagcactaaacttggacgataaatactatcccgttggtgctatg
atagcagctatttcagatgcaaagaataaattactctttgcttctgattttagaaaacaa
gcgagagacttttaccaacaaaaggttgctgatgtatatgagtattatgaacgtgaattg
cgtaaaaataatgccttagactttgatgatcttttattggtggcagtaaaattattgcaa
tctaatgaagctgtactagataaatatagcaagcgttttcgctatgtcatgatcgacgaa
tatcaagatacgaaccatgctcaatatttattagctaaattattagcctctcattggaaa
aatattgctgttgtaggtgatgctgaccaaagtatttatgcttggcgtggtgcagatatt
caaaatatcttggactttgaaaaggattatcctaactgtacatctattaaactagaacaa
aactatcgttctacaaaaattatccttgatgcagccaatgcagtaatcgaaaataacgaa
ggacgacctaagaaaaatctgtggacagacaagacagaaggcgctaaaatccagcatttt
atagctcaatctgaacatgaagaagcggctttcatcggcgatacaatagctaaaaagcat
gatattcatggcgtcccatatggagatatggctattctatatcgtacaaatgctcagtct
cgtgtgcttgaagaggcacttatcaaacgtgctttgccatacacaatggtggggggcacg
aagttctacgatcggaaagaaattaaagatgtattggcttacttgcgcgtattatataat
cctttcgatgatttgagcctattacgtattatcaatgtacctaagcgtagtattggtgct
actacagtggcaaaactacaagattatgcacgtgcaaatggcacatccttgtttatgaca
ttaacacagttacatctggtagatacgattaaaggtaagacaaaggaaaagttagaggag
tttggtatccttatctttactctcgtagctgaaatggaagatagaactgttcttgatatc
ttagaatctattttagatagaacaggttacttggcacaattagaagaaagtacagatcca
caagatcaggctcgcgctgagaatatcggtgagcttttatctgtagctaaagacttccaa
gatacaaatccaactggtacagtggaggacttcttggaacaagtagcccttgttaatgat
gttgattccttcgagcaagaagagtctaaagtgacattaatgacattacatgctgccaaa
ggtttggagtttccaattgtattcttaggaggattggaggaaggtttattccctcatagc
cgcaccttgatgaaccctgaggaaatcgaagaggaacgtcgtcttgcctatgtaggtatt
actcgtgctgaaaaggaattatatatttctaatgccactacgcgcaccgtatttggacgc
actagcagctatttaccatctcgctttatcgacgaaattcctgaagagttagtagatggt
ttgcgtgctaagcgtaaagtacctgatgatattaagcgtcatgtgccgcaacatatgagt
gtcacaagccgacctgttacgaagccaattgttcgcaatgaagtaattgctgattggaag
attggtgatacagccattcatagtaagtggggcaatggtaaggttatcaatgttgctggt
gaaggggctggtatgaagctaactattgaattccccacacaaggtgtacgtgtggtcatg
gctaaatttgcaccggttaaaaagggataa
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