Veillonella dispar: NCTC11831_01159
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Entry
NCTC11831_01159 CDS
T05848
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vdn
Veillonella dispar
Pathway
vdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC11831_01159 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vdn03400
]
NCTC11831_01159 (recD)
Enzymes [BR:
vdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC11831_01159 (recD)
DNA repair and recombination proteins [BR:
vdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC11831_01159 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
OB_YrrC
UvrD_C_2
HHH_RecD2
SH3_13
Viral_helicase1
AAA_11
NAT10_TcmA_helicase
UvrD-helicase
PIF1
PhoH
AAA_22
SLFN-g3_helicase
AAA_12
nSTAND3
AAA_28
AAA
AAA_23
HHH_5
UvrD_C
AAA_29
AAA_18
AAA_16
TrwB_AAD_bind
NTPase_1
SMC_N
Motif
Other DBs
NCBI-ProteinID:
VEG93716
LinkDB
All DBs
Position
1:complement(1214114..1216267)
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AA seq
717 aa
AA seq
DB search
MDAIRGFVYRTIYENTQRTYCVFVLKDYNEEYITCTGKFESPKEGEDIEVRGRYVEHEKY
GRQFDATSVEKLKPDNMGAAKTYLLNLGIKGFGEKSVEKVLEYFGIRILEVLREERPEEI
KDVPGLRKSVKDELFNTLLGEGILSDLNHFFESHHISSKWSRIVYTYYGVQSVAVIEDNP
YTLLRVAPDMLFGTADTLAEHLGITGSDTRRLEAGLEWILRSLDNQGHTCLPVDQLIGRL
DDLLQTDVDDIANFIESLLEQGALYSTYYEDILYIYPPEMYVSEVESVHYTKDFLLEADP
ISLDIPSFIEKFEADNHITFGDAQKEAIQLSFFEKFSLITGGPGTGKTTIIKALVKGFQL
GGLGRIILCAPTGRAAKRLTEATEFEATTIHRLLVPVQGSDSYDFTKNEEDPLDIDVIII
DEASMLNVRLFYSLMAAIPKEAHVIIVGDVDQLPPIGAGFVLKDLLDSDCVPYTRLNQIY
RQSSGNTIVESAYAINRGEMPNLDSVSEEFSFIPVKSYDMMMKAIIDVYKREQAHVEDEL
DIQIISPMRRGEAGSTLISQYVQQAVNPPDSLKGEARVNGITYRVGDKVIQILNDYELEV
FNGEIGVIYAITRSDICIRFIHKEVRLPIDEAHMIMPAYAITVHKSQGSEYGVVIIPFVP
RYGGMLQRNLLYTAVTRAKRKVIIVGTTSAIERAVRTVNADERYTLFKERLQGRCDS
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggacgccatacgaggatttgtataccgaactatatatgagaatacacaacgtacgtat
tgcgtgtttgtccttaaggattataatgaggaatacattacttgtactggtaaatttgag
tctcctaaagaaggggaagatatcgaagttcgaggccgttatgtagagcatgaaaaatac
ggtcgtcaatttgatgctactagtgtagaaaaacttaaacctgataacatgggggctgct
aagacctacttgttgaatttaggtattaaaggttttggtgaaaagtccgtagaaaaggtt
cttgagtattttggtatccgtattttagaagttttacgggaggaacgtcccgaagaaatt
aaggatgttcctggacttcgtaaaagtgttaaggacgaattatttaataccttacttggt
gaaggtattttatctgatttaaatcacttttttgaaagccatcatatttcttctaaatgg
agtcgtatcgtatacacctattatggtgttcagtctgttgctgttatcgaggataatccg
tataccttgttacgtgtggctccagatatgctttttggcaccgctgatacgcttgcagaa
cacttggggattacaggtagtgatacgcgtcgtttagaagcgggtttggaatggattctg
cgcagtttggataatcaagggcatacatgtttgcctgtagatcaacttatcggtcgttta
gacgatttattacaaactgatgtagatgatattgctaattttattgaaagtctcttggag
caaggtgctttatatagtacgtattatgaagatattttatatatttaccctccagaaatg
tatgtgtctgaagtagagagcgttcattatacaaaagatttcttattagaggctgatccg
atatctcttgatattcctagctttatagaaaagtttgaagctgataatcatattacattt
ggggatgctcaaaaagaagctatacagctatccttctttgaaaagttttcccttataact
ggtggccctggtactggtaaaacgacgattattaaggccttagtaaaaggcttccaactt
ggtggactagggcgtattattctttgtgctcctacgggacgtgctgcaaaacgacttaca
gaggcgacggagtttgaagcaactacgattcatagattattagtacctgttcaaggtagt
gactcttacgactttactaagaatgaagaggatccattagatatagatgttatcatcatt
gatgaagcatctatgcttaatgtacgcttgttctattccttaatggcggccattccaaag
gaagcccatgtcattatcgttggtgacgttgatcaactaccacctattggggctggtttt
gtattaaaagacttactcgatagtgattgtgttccttatacacgactcaaccagatttat
cgtcaaagctctggtaatactatcgttgaaagcgcctatgctattaaccgtggtgaaatg
ccaaatctggacagtgtaagtgaagagttttcgtttatacctgttaagtcttatgacatg
atgatgaaagctatcatcgatgtatataaacgagaacaagcgcatgtagaggatgagcta
gacattcaaattatttctcctatgcgccgtggtgaagccggtagtacattaatttctcaa
tatgtacaacaagctgttaatccaccggatagcttaaaaggggaagcccgtgtaaatggc
attacttatcgcgttggcgataaggttatccaaattctcaatgactatgagttagaggtc
tttaatggtgaaattggagtaatttacgccattacacgaagcgatatttgtatccgattt
atccataaagaggttcgtctacctattgatgaagctcatatgattatgcctgcttatgct
attacggttcataagagccaaggtagtgagtatggtgtagttatcattccatttgtacca
cgttatggtggtatgttgcagcgtaatttgttgtatacagctgttacaagagcaaaacgg
aaggttatcattgtgggtactacaagcgctatagaacgtgctgtacgtactgtaaatgca
gatgaacgatatacattgtttaaagaaagactacaagggagatgtgattcgtaa
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