Veillonella dispar: NCTC11831_01308
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Entry
NCTC11831_01308 CDS
T05848
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vdn
Veillonella dispar
Pathway
vdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11831_01308 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vdn03019
]
NCTC11831_01308 (cshA_1)
03009 Ribosome biogenesis [BR:
vdn03009
]
NCTC11831_01308 (cshA_1)
Enzymes [BR:
vdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11831_01308 (cshA_1)
Messenger RNA biogenesis [BR:
vdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11831_01308 (cshA_1)
Ribosome biogenesis [BR:
vdn03009
]
Prokaryotic type
rRNA helicases
NCTC11831_01308 (cshA_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
VEG93865
LinkDB
All DBs
Position
1:1370846..1372144
Genome browser
AA seq
432 aa
AA seq
DB search
MKSFKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLPI
LQRVHTDVHQEQVLIIAPTRELVKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGRR
PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLL
FSATIPDKIRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTEEKTQRLIKMIEEDNP
FLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIA
ARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIERAIQ
ATLTKYTKDGQIKTKGNASAAPKRAKVSGKPKITSSYQSTKAKAHKARGHKGANTRQRRT
STSQTGRRGKRR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcttttaaatctctaggcgtttgtgatgaactcatccaagcccttcaaaaacaa
ggtatcaaggagccaactccaattcaagaacaagccattcctgttgtatttaaagggaat
gatgttatagcaaaagctcaaacaggcacaggcaaaacattagccttcttattgccgatt
ctacaacgtgttcacactgatgtgcatcaagaacaagtgctcatcattgcacctacccgt
gagcttgtaaaacaaatttccgatgaggcaaaagaaataggttctattttaaatgtagac
atcctccctctcatcggcggtaaaacgattgaagcacagttacaacaattaggacgtcgc
cctcaagttattttaggcactcctggtcgcctattggatcacgcaaaacggggttcactc
cacttagattgcattcgtcgtgtcgtactcgatgaagctgaccaaatgcttcacatggga
ttcttaccggacattgaaaacctcattagtcaaacagatgctaatagacaacttttacta
ttctctgcaacaattcctgataagattagaaatcttgcaaaagcgtatatgtctaaaccg
gcttctgtaacagctgagggtaaacatgtaacacttgaatctatcgatcaacgcgtatac
atgatgaacacagaagaaaaaacgcaacgtctcatcaaaatgatcgaagaagacaaccca
ttcttagcaattgtgttctgtaataagcgtgaaggtgctgttcgcttatcctatgagtta
actgcagcaggcctaaatattgctgaaatgcatggcgatttgacacaaggtcgacgcact
caaatattacgtgatttcgcaaaagctaaaacacaaatcttagtagctacagatattgcg
gctcgcggcattgacatcgaaggcattacacatgtttataactacgacgtaccacgcgac
gtagattactatatccaccgtattggccgtactggtcgtgcaggcaactctggtgtagct
gttacatttgctacaccgcaagatgaatcttggttacgtcgtattgagcgcgccatccaa
gcaacgcttactaaatacactaaagatggacaaattaagactaaaggtaatgcaagtgcg
gcacctaaacgtgcaaaagtatctggcaaacctaagattacaagttcctatcaatctaca
aaggctaaagctcataaagctcgtggccataaaggtgctaatacacgccaacgccgtacg
tccacatcacaaacaggacgtcgtggtaaacgcagataa
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