Veillonella dispar: NCTC11831_01516
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Entry
NCTC11831_01516 CDS
T05848
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vdn
Veillonella dispar
Pathway
vdn03030
DNA replication
vdn03430
Mismatch repair
vdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11831_01516 (dnaE)
03430 Mismatch repair
NCTC11831_01516 (dnaE)
03440 Homologous recombination
NCTC11831_01516 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vdn03032
]
NCTC11831_01516 (dnaE)
03400 DNA repair and recombination proteins [BR:
vdn03400
]
NCTC11831_01516 (dnaE)
Enzymes [BR:
vdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC11831_01516 (dnaE)
DNA replication proteins [BR:
vdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC11831_01516 (dnaE)
DNA repair and recombination proteins [BR:
vdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC11831_01516 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF7443
Motif
Other DBs
NCBI-ProteinID:
VEG94060
LinkDB
All DBs
Position
1:complement(1602509..1605916)
Genome browser
AA seq
1135 aa
AA seq
DB search
MQPFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECVSQGI
KPIIGCEVYVTEGSRLDKQEGRSRERLKHLILLAETMEGYRNLVKIVSKASTEGFNYKPR
ADRDLLRQYSKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNHG
LPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKFP
NDEFYLKSGDEMAELFGHIPGAMENTLKIADRCNVEFNFDEHHLPHFDVPEGETSKTYLR
KVCEREIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYAREHDILVGPGRG
SAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKRGQAIEYVTRKYG
QERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITLDKALQGKELKAL
YEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQNANDDGFVTQYDKDN
IEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDKAACDILTKGDTSGVF
QLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDRRHGKKEVTYLHPILE
PILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESVLKAQRESFIQGSINN
GIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYFPEFMAATMTSFMQNM
QKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIKNVGDNAIDRLIRERNE
HGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLLHMYESAQAVGAKEQKD
AAMGTMSLFGDIEESVDFIPVPNVEDLSEDDKLKDEKEYTGFYITGHPLQGYAKELEGLF
ELGALVENPEQYDGQTITFGGLIENKTDRMTRRNEVMSILRIEDYSGAANVVAFPKVFSQ
SQQFLAVDMIVKVKGRVDADEKGVQIIADRIMPLKVNYSQAKHVAIHIYSQYDTPENSEA
LKRLLTNTAGSVPTSLYLHRQRKRINLPPNMCFDPSDESIKAIEAILGDGSVEVQ
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcagccatttgtacatttacatagtcatacagagtttagtttgctggacggtatcagt
cgtttgcctgacatggtacgtcgtgcgaaggagttaaatcagccggcccttgccattaca
gatcacggcaatatgtacgcagccatttatttttataaggaatgtgtgtcccaaggtatc
aaaccgattattgggtgtgaagtatatgtcacagaaggtagtcgtcttgataagcaggaa
ggtcgcagccgtgaacgattaaaacatctcattctgttagctgagaccatggaagggtat
cgaaatctagtaaaaatcgtgtcgaaagcctctactgaagggtttaattataagcctcgt
gcagaccgcgatttattgcgccaatacagtaaaggcataattgccctcagtgcttgtatt
caaggggaaatccctcagtatattttgcaagataatatggaaggtgccaagcgatccatt
gaatggtatatcgagacgtacggcaaggataatttcttcttagaaatccaaaatcatggc
ttgccagaggaggcaaaggcccaagaggagctcattaagctcagcaaggaatacggcctt
ggcatcgtagcgtctaatgacttccactatgttttaaaagaggatgcagacgcgcaggat
attaaggtatgtatttctacaggtcgtcgtcgtgccgaagtggaccgtttaaaattccca
aatgatgagttctatctaaaatctggggatgagatggcagagctatttggacatattcct
ggggccatggaaaacaccttaaaaattgcagaccgctgtaatgtagagtttaattttgat
gaacatcatttgccgcactttgatgtgccagaaggggaaacgtctaagacctatttgcgt
aaggtttgtgaacgagaaattcctcgcctctatggggagacctctgaagagttacaaaaa
cgcctcgattacgagttagatgttattggaacgatgggctttgaggattacttcctcatc
gtatgggactatgtacgctatgcccgtgagcacgacatcttagtaggtcctggccgtggt
tcagcagctggttctgtagtagcctatctacttggcattacaggccttgatccattaaaa
tacgatttgctctttgaacggttcttaaatccagagcgggtaagcatgcctgatatcgat
attgacttctgttatgaaaagcgtggccaagccatcgaatatgtaacacgaaaatacgga
caggaacgtgtatcccagattattacctttggtactgaggcagcgcgcgccgtaattcgt
gatgtaggccgcgtgctcgacttaccactggcggaagtaaaccgcattgctaagatgatt
ccaaacgaattaggaattaccttagataaagctctacaagggaaagagttaaaagcgtta
tacgaagctgatccaaacgttaaagaattatttgattttggtaagaagctagaagggatt
gcacgaaattcgtccactcatgcggcgggcgtcgtaatttccgcggatccactagatgac
cacgtaccagtacaaaatgccaatgatgatggctttgtaacacagtacgataaggataac
atcgaggaattaggcctcttaaagatggacttcttaggcctccgtactttgacggttatg
ggggatgccttaaagctcatcaaggcgaaccgcggtattgacctcgatttagatgcaata
ccgctcgatgataaggctgcttgtgatatcctcacaaaaggcgacacctctggtgtattc
cagctcgaatcggaaggtatcaccaagcttgttatggaccttaagcctgaacattttgag
gatttaattccattggtagccttgtaccgtccaggtccattgggctctggcatggtggcg
gattttatcgaccgccgtcacggtaaaaaagaggttacctatttacatcctatattggaa
ccgattttgaaagatacctttggggtaatcttgtaccaagaacaggttatgcaaattgca
tccgccatgggcgggttctcccttggtcaagcggacttaatgcgccgcgccatgggtaag
aaaaaagaatccgttctaaaggcgcagcgcgagtcctttattcaaggttccataaataat
ggtatagaagagtccattgcaaatgaagtatttgacttgctcgtatactttgcaggctat
ggctttaataaatcacatagtgcggcttatgcgtacattgcgtatcaaacagcgtatctg
aaagcccactatttccctgaattcatggccgctaccatgactagcttcatgcaaaacatg
cagaaattgacgtactacatcaatgcctgcaagaagcataatgttaaggtactcggtcca
gatattaactattctgaacgcagcttcgccgtgcaaggtgatgccattcgcttcggtctt
gggggcatcaagaacgtaggggataatgccattgatcgtttgattcgcgagcgtaatgag
cacggcctctatacggatatcgtagatttctgtaaacgcgtggacaacaaggttgttaat
aaacgacttcttgaaagtctcattcgatgcggtgccatggatggtttcaaggaaaacaga
aaccaattattgcatatgtatgaaagcgctcaagccgtaggtgctaaagagcaaaaggat
gccgctatgggcaccatgagtctctttggcgatatagaggagtccgttgacttcatccct
gtaccgaatgtggaggatttatcggaagacgataaattaaaggatgaaaaggaatataca
ggcttttacattacaggccatccattgcaaggctatgcgaaggagctagagggcctattt
gaactgggggctctcgtagaaaatccagagcaatatgatggccaaaccattacctttgga
ggtttgattgaaaataagacggaccgcatgacaaggcggaacgaggttatgtccattctt
cgcatcgaagattattctggtgcggctaacgtagtggcattccctaaggtctttagtcaa
agtcaacagttccttgcggtcgatatgatcgttaaggtaaaaggccgcgttgatgcggat
gaaaagggtgtgcaaattattgcagaccgcattatgccattaaaggtaaactatagtcag
gcaaaacatgtggcaatccatatttatagccaatatgacacgccagaaaatagtgaagcc
ttaaaacggctgttaacgaacaccgcaggctctgtgccaacatcactatatttgcaccgt
caacggaaacgcattaatttgccaccgaacatgtgctttgaccctagtgatgaatccatc
aaggctattgaagctatattaggtgatggatccgtagaggtgcaataa
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