Veillonella dispar: NCTC11831_01856
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Entry
NCTC11831_01856 CDS
T05848
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vdn
Veillonella dispar
Pathway
vdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11831_01856 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vdn03019
]
NCTC11831_01856 (rnjA)
Messenger RNA biogenesis [BR:
vdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11831_01856 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
VEG94379
LinkDB
All DBs
Position
1:complement(1938137..1940272)
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AA seq
711 aa
AA seq
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MNTTDNQVTAQVKAEPTVAKTATRTAAAEGEHKQTRRRTNTRRPAGEGRTRQHATGEGEG
TTRQRRTNTRTNANGGRTNTTRRTNTRRNAEQGEGQERTERKPRQTRAPRGERSENTRNT
RSNNGRNSQNRNNNRPNNRSTNRNNQEAPVELVGRTPNGANKGKFQIIPLGGLGEIGKNM
TIFQYEDEIIVLDSGLAFPSEDMLGVDIVIPDMSYIIENKDRVKAVVITHGHEDHIGSLA
YLMKEINCPVYATNLVCGLIEGKFKEHKVSPKCLRTIAAGDEVQIGQVKVGFIQTNHSIP
DSCAVYFDTPIGTVLHTGDFKIDQTPVDGRLMDMHKFAELGNKGVLALMSDSTNVEKPGT
TGSESSVGPAIKQAVGEAKGRVVLATFASNVSRIQQAIDAAVMFNRKVVVMGRSMVNVTE
IAQERGYLNIPPNTIIDVDVMHNYTDDQIMILTTGSQGEPMAGLSRMATSNHRTVELAPN
DTVIISATPIPGNEGAVGRTIDNLLRLGCHVVYGKDRGIHVSGHASQEELKTMLNLVRPE
YFIPVHGEYRMLRRHGELGVAMGVDPKKVLIGDNGQIFEFDKDGGRKGGRVQAGAIFVDG
LGVGDVGNIVIRDRQQLAQEGMVIVVMAMDKASGTIVAGPDLVSRGFVYVRDAEELMIAA
EHRVDQVLEECEMQRIKDWTTIKQNVRDALGKFFYDKTRRRPMILPIIQDV
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgaatacaacagataatcaggttactgcacaagtgaaagcagaaccaacagtagcgaaa
actgctactcgtacagctgcggctgaaggcgaacataaacaaactcgccgccgtactaat
acacgccgtcctgctggcgaaggtcgtactcgtcaacacgcgactggtgaaggtgaaggc
acaacacgccaacgccgtacaaatactcgtacaaatgcaaatggtggtcgtactaacacg
actcgccgtacaaatacacgtcgcaatgctgagcaaggtgaaggtcaagaacgtacagaa
cgtaaacctcgccaaactcgtgcaccacgtggtgaacgcagtgaaaatacgcgtaatacg
cgctctaacaatggtcgcaatagtcaaaaccgtaataacaaccgtccaaataatcgctcc
acaaaccgcaacaatcaagaggctcctgtggaattagtaggtcgtacaccaaatggcgct
aataagggtaaattccaaatcatccctcttggcggtcttggtgaaatcggtaaaaacatg
accatcttccaatatgaggacgaaattatcgttctcgactctggccttgcgttccctagc
gaagatatgcttggcgtagatatcgttattcctgatatgagctatatcattgagaataag
gatcgcgtgaaagctgtcgtaattacccatggtcacgaggaccatattggttccttggca
taccttatgaaagaaattaactgcccagtatatgcaacaaatctcgtttgtggtttgatt
gaaggcaagtttaaagaacataaggtatctccaaaatgtcttcgtactattgctgcaggc
gatgaagttcaaattggtcaagtgaaggttggttttatccaaacaaaccactccattcct
gactcctgtgctgtgtacttcgatacaccaatcggtactgtacttcatacaggtgacttt
aaaatcgaccaaacaccagttgatggtcgtttgatggatatgcacaaatttgctgagctc
ggtaataaaggtgtattggccttgatgtccgactctacaaacgttgaaaaaccaggtact
acaggttctgaaagttccgtaggccctgctattaaacaagctgttggagaagcaaaaggc
cgcgttgtgttagctacatttgcatctaacgtatctcgtatccaacaagctattgatgcg
gcagttatgttcaaccgtaaggttgtcgttatgggccgcagtatggtaaatgttacagaa
atcgctcaagaacgcggttacttgaacattccaccaaatacaatcatcgacgtagatgta
atgcacaactacacagatgaccaaattatgatcttaacaacgggttctcaaggtgaaccg
atggcaggcttgtcccgtatggctacaagcaaccaccgcactgtagagttggcgccgaat
gatacagttatcatctctgctacaccaattccaggtaacgaaggtgctgtaggtagaact
atcgataacttgctccgattaggttgtcacgttgtatatggtaaagatcgtggtatccac
gtatctggtcatgcgagccaagaagagcttaaaacgatgctcaaccttgttcgcccagaa
tacttcattccagttcatggtgagtaccgcatgttgcgccgtcatggtgaacttggcgtt
gctatgggcgtagatcctaagaaagtccttatcggcgacaatggtcaaatctttgaattt
gataaagatggtggccgtaaaggtggccgtgtacaagctggtgctatcttcgttgatgga
cttggcgttggcgatgtaggtaacatcgttatccgtgaccgtcaacaattggcacaagaa
ggcatggttatcgttgtaatggcgatggataaagcttctggtacaatcgtagctggtcca
gacctcgtatctcgtggcttcgtatacgtacgcgatgcagaagaacttatgattgctgca
gaacatcgtgtagaccaagtccttgaagaatgcgaaatgcaacgtattaaagattggact
actattaagcaaaacgtacgcgacgcgttgggtaaattcttctatgataaaactcgccgt
cgtccgatgatcttgccgattattcaagacgtataa
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