Verrucomicrobium sp. GAS474: SAMN05444156_0258
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Entry
SAMN05444156_0258 CDS
T09813
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMN05444156_0258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
veg03400
]
SAMN05444156_0258
DNA repair and recombination proteins [BR:
veg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMN05444156_0258
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMN05444156_0258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
AAA_29
AAA_16
AAA_21
RsgA_GTPase
nSTAND1
AAA_22
AAA_25
DnaJ_CXXCXGXG
APS_kinase
Viral_helicase1
BCA_ABC_TP_C
HUTI_composite_bact
cobW
Paramyxo_C
Motif
Other DBs
NCBI-ProteinID:
SDT86997
UniProt:
A0A1H2DVU7
LinkDB
All DBs
Position
I:complement(292436..295330)
Genome browser
AA seq
964 aa
AA seq
DB search
MSVNEIRIGGARQHNLKNVSVTIPRGKLVVFTGVSGSGKSSLAFDTLYAEGQRRYVESLS
VYARQFLDQLEKPDVDYIEGLSPAIAIEQRTSGGNPRSTVATTTEIYDFLRLLFAHLGTA
HHPETGKPLKRETVQQIADRVLALPEGTPVQLLAPLILDQKGEFRDIVEKMKRDGYVRAR
IDGAITEIENVTGLDRNKHHTIEAVIDRVKVTPGARQRVAESLETALREGRGIVVVLRHD
ADGKTREWRSSNRNFDPETGAHFEEMTPRHFSFNSPQGACPVCHGLGVGQVFDPELVVPD
PAATLEEMPIAPWKRGNAGMAAIYKAQLAAVASHYGLGQLMDRKWEETPEAFRNTMLHGS
GEEVIPFAIGKKSTEKPFEGVLPQLARLYRESESELTRQRLARFMSRETCEACHGARLKK
EVLAVTLAAAGPLSASPPEVLNIDQLCRLSVEAAFRFVTRLEKTFTAAQEKIGRDIVREL
KGRLKFLVEVGLGYLELNRESGTLSGGESQRIRLASQIGSQLTGVLYILDEPSIGLHQRD
NDRLLAVLRQLRDLGNSLVVVEHDDDTIRAADYLVDLGPYAGVRGGQVVAAGTVAEVEAN
EKSLTGRYLSGRDRIEVPKARVQPRPGNPWLKVIGARENNLKNVDAAFPLGLFTCVTGVS
GSGKSTLVNDVLSRALFRHFHGSKERPGLHDRIEGVDFLDKVVEIDQSPIGRTPRSNPLT
YTGAFNGIRDLFAQLPSSRVRGYGAGRFSFNVAGGRCEHCEGGGMTVIEMNFLPPVYVPC
EVCNGRRFNRETLEITYKGRTIADVLEMTVDDGLALFRNIPAVGDKLEALASVGLGYIRL
GQQGTTLSGGEAQRIKLAAELAKKATGRTVYLLDEPTTGLHWADIELLLAVLGKLRDAGN
TLIVIEHNLHLIKCADYVIDLGPEGGKAGGKIVATGTPEDIAANPESRTGHYLKTVLSPA
GRGR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgaacgaaatccgcatcgggggcgcccgccagcacaacctgaagaacgtctcg
gtgacgattccccgggggaagctcgtcgtcttcaccggggtcagcggctcggggaagtcg
tcgctcgccttcgacacgctctatgccgaggggcagcggcgttacgtggagtccctctcg
gtctacgcgcgccagttcctcgaccagctggagaagcccgacgtcgactacatcgagggg
ctctcccccgccatcgcgatcgagcagcggacctcgggcggcaacccgcgctcgacggtg
gcgacgacgaccgagatctacgacttcctccggctcctcttcgcccacctcgggacggcc
catcatccggagacggggaagccgctgaagcgggagacggtccagcagatcgccgaccgg
gtgctggcccttcccgaggggacgccggtccagctcctcgccccgctgatcctcgaccag
aagggggagttccgcgacatcgtcgagaagatgaagcgcgacggctacgtccgcgcccgg
atcgacggggcgatcaccgagatcgagaacgtgaccggcctcgaccggaacaagcaccac
accatcgaggcggtgatcgatcgggtgaaggtgacgcccggggcgcggcagcgggtcgcc
gaatcgctcgagacggcgctccgcgaggggcgcgggatcgtcgtcgtcctgcggcacgac
gccgacgggaagacgcgggaatggcgctccagcaaccggaacttcgaccccgagacgggg
gcccacttcgaggagatgacgccccgccatttctccttcaacagcccgcagggcgcctgc
ccggtctgccacggcctcggcgtcggccaggtcttcgatcccgagctggtcgtccccgat
ccggcggcgacgctcgaggagatgccgatcgccccctggaagcgggggaacgccgggatg
gccgccatttacaaggcgcagctcgccgccgtcgcctcccattacggcctcggccagctc
atggaccggaagtgggaggagacgcctgaggcgttccgcaacacgatgctccacggttcg
ggcgaggaggtgatccccttcgccatcgggaagaaaagcacggagaagccgttcgagggg
gtcctcccccagctggcccggctctaccgcgagagcgagagcgagctgacgcggcagcgg
ctcgcccgcttcatgtcgcgggagacctgcgaggcgtgccacggggcgcggctgaagaag
gaggtgctggcggtgacgctcgccgccgccggccccctctcggcctccccgccggaggtc
ctcaacatcgaccagctctgccgcctctcggtcgaggccgccttccgcttcgtcacgcgg
ctggagaagaccttcacggccgcgcaggaaaagatcgggcgcgacatcgtccgggagctg
aagggccgcctgaagttcctcgtcgaggtcggcctcggctacctggagctgaaccgcgag
agcgggaccctctcgggcggcgaatcgcagcggatccggctcgcctcccagatcggctcc
cagctgacaggagtcctctacatcctcgacgagccgagcatcggcctccaccagcgggac
aacgaccggctcctcgccgtcctccggcagctgcgcgacctcgggaacagcctcgtcgtc
gtcgagcacgacgacgacacgatccgcgccgccgactacctcgtcgacctcggcccctac
gccggggtccggggcgggcaggtcgtcgcggccgggacggtggccgaagtcgaggcgaac
gagaagtcgctgaccggccgctacctctcgggccgggaccggatcgaggtgccgaaggcc
cgcgtccagccccgcccgggcaatccgtggctgaaggtgatcggggcgcgggagaacaac
ctgaagaacgtcgacgccgccttccccctcggcctcttcacctgcgtcaccggggtcagc
ggctcggggaagagcaccctcgtcaacgacgtcctctcccgcgccctcttccgccacttc
cacggctcgaaggagcgccccggcctccacgaccggatcgagggggtcgacttcctcgac
aaggtcgtcgagatcgaccaatcgcccatcgggcggacgccgcgctcgaatccgctgacc
tacaccggcgcgttcaacggcatccgcgacctcttcgcccagctcccctcctcgcgcgtc
cggggctacggcgcggggcgcttcagcttcaacgtcgccgggggccggtgcgagcattgc
gaggggggcgggatgacggtgatcgagatgaatttcctcccccccgtctacgttccctgc
gaggtctgcaacgggcggcgcttcaaccgggagacgctcgagatcacctacaaggggcgg
acgatcgccgacgtcctcgagatgacggtcgacgacggcctcgcccttttccgcaacatc
cccgccgtcggcgacaagctcgaggccctcgcctcggtcggcctcggctacatccgcctc
ggccagcaggggacgaccctctccggcggtgaggcgcagcggatcaagctggccgccgag
ctggcgaagaaggcgacggggcggaccgtctacctcctcgacgagccgacgaccggcctc
cattgggccgacatcgagctcctcctcgccgtcctcgggaagctccgcgacgcggggaac
accctcatcgtgatcgagcacaacctccacctcatcaagtgcgccgattacgtcatcgac
ctcggccccgagggggggaaggcgggcgggaagatcgtcgccaccggcacccccgaggac
atcgccgcgaacccggagagccggaccggccattatctgaaaaccgtcctttcccctgcc
gggaggggacgctaa
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integrated database retrieval system
