Verrucomicrobium sp. GAS474: SAMN05444156_0391
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Entry
SAMN05444156_0391 CDS
T09813
Name
(GenBank) DNA polymerase-3 subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg03030
DNA replication
veg03430
Mismatch repair
veg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMN05444156_0391
03430 Mismatch repair
SAMN05444156_0391
03440 Homologous recombination
SAMN05444156_0391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
veg03032
]
SAMN05444156_0391
03400 DNA repair and recombination proteins [BR:
veg03400
]
SAMN05444156_0391
Enzymes [BR:
veg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMN05444156_0391
DNA replication proteins [BR:
veg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMN05444156_0391
DNA repair and recombination proteins [BR:
veg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMN05444156_0391
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
CoxE_N
TMEM132_N
Motif
Other DBs
NCBI-ProteinID:
SDT88234
LinkDB
All DBs
Position
I:440975..444523
Genome browser
AA seq
1182 aa
AA seq
DB search
MSSSFVHLHVHSEFSLLDGACRIDDLAAKAKEFGMPALALTDHGNLFGAIGFYQACLKAG
VKPIIGCEVYMAPGDRRERKANSARDASTHFMLLAKNEVGYHNLIRLVSSAHLEGQYYKP
RIDKEILREHAEGLIGTSACLKNEIAQHLLQDQVEHAEKAILEYQSMFAPGDFYLEIHRH
GIPGQEQVLRHLVALGKKLGVKLVAANDVHYLTKDDSAAHDALLCIGTGALLTDEKRMRY
TVNEFYFKSPDEMAALFHDLPEALESTLEIAGKCNLKIELGKNKFPAYPLPEGQATAEGY
LRELCIEGVKKRYTDPKTDTPERMKEIWERLDFELNVLAKTGFTAYFLIVWDFIDYAKRA
GIPVGPGRGSAAGSLIAYALGITDLCPLRYALFFERFLNPERVSPPDIDVDFCYNRRPEV
IEYVRQKYGERSVAQIITYGTLGAKMALRDVSRVMGLSYGDADKLAKMIPNELNIELSDA
LEKSPDLKNAYANDETAKQVLDTAMALEGLTRQVGVHAAGVVIADGDLTDNVPLTRDDSG
GVVTQWSMEHLSEVGMLKMDFLGLKTLTVIDDCLKMVEKNLGKKIVPADIPLDDARTYDL
ISAAQNVGVFQLESKGMGGACASVKPKCIEDIIALVALYRPGPMENIPLFGDRKQGRVPL
EYPHKLLEASLRETYGIIVYQEQVMQAANILAGYSLGQADLLRRAMGKKKFEEMEKQRAL
FVKGCAETNQIPAEEANTLFDTLEKFAGYGFNKAHAACYGVLAYHTAWLKANYPEEFLAA
LMSNELGKNEKIAEFVDEARKMGIPVLPPDINASFGPFTVEKIEGKKKRAIRYGLAGVKN
VGSGAIEQIVAAREKSGPFTDLKTFCLCVDPHLLNKRLMESLVRVGAFDSFGKNRATTEA
SLDGALGAASSTAKEKASGQTSLLDMLDEAPALDAASAGRGVQDQPEYPSEDLLGYEKEL
LGFYFSGHPLDKHLPRLRPFQTTTVDKLAGIEEGTPVRVAGMITKFEVKISKKTGNNLPI
VTFEDQTGKIEFMLMGGLYEKMEKPPAAKDLVVFTANVTFRGEDPSLRVQDYYSLDEAES
KLLKGLTIDIDLDGWDLVKWDSLHQLILDHPGPARLYFRCTRGQNGSRRTTVLEPSDLFT
VAPRLQFMDSLKSLLGGPNYEIVPSRDLPRARKPFVRKPEGG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctccttcgtccatctccacgtccattcggagttctcgctcctcgacggggcg
tgccggatcgacgacctcgcggcgaaggcgaaggagttcgggatgcccgccctggcgctg
accgaccacggcaatctcttcggcgcgatcggcttctaccaggcctgcctgaaggcgggg
gtgaagccgatcatcggctgcgaagtctacatggccccgggcgaccggcgggagcggaag
gcgaacagcgcccgcgacgcctcgacccacttcatgctcctcgcgaagaacgaggtcggc
taccacaacctcatccgcctcgtctcctcggcccacctcgagggccagtattacaagccc
cggatcgacaaggagatcctccgcgagcacgccgagggcctcatcgggacgagcgcctgc
ctgaagaacgagatcgcccagcacctcctccaggaccaggtcgagcacgcggagaaggcg
atcctcgaataccagtcgatgttcgcccccggcgacttctacctcgagatccaccgccac
ggcatccccggccaggaacaggtgctgaggcacctcgtcgcgctcgggaagaagctcggc
gtgaagctcgtcgccgccaacgacgtccactacctcacgaaggacgactcggccgcccac
gacgccctcctctgcatcggcaccggcgccctcctcaccgacgagaagcggatgcgctac
acggtgaacgagttctacttcaagtcccccgacgagatggcggcgctcttccacgacctc
cccgaggccctcgaatcgacgctggagatcgccgggaagtgcaacctgaagatcgagctg
gggaagaacaagttccccgcctaccccctccccgagggccaggcgaccgccgagggctat
ctccgcgagctctgcatcgagggggtgaagaagcgctacaccgacccgaagaccgacacc
ccggagcggatgaaggagatctgggagcggctcgacttcgagctgaacgtcctagcgaag
accggcttcaccgcctacttcctcatcgtctgggacttcatcgactacgcgaagcgggcg
ggcatccccgtcggtcccgggcgcggcagcgccgccggctccctcatcgcctacgccctc
ggcatcaccgacctctgccccctccgctacgccctcttcttcgagcggttcctcaacccc
gaacgggtctcgccgcccgacatcgacgtcgacttctgctacaaccgccgccccgaggtc
atcgaatacgtccggcagaagtacggggaacgctccgtcgcccagatcatcacctacggc
accctcggcgcgaagatggcgctccgcgacgtctcccgcgtcatgggcctctcctacggg
gacgccgacaagctcgcgaagatgatcccgaacgagctcaacatcgagctctccgacgct
ctcgagaaaagccccgacctgaagaacgcctacgcgaacgacgagacggcgaagcaggtc
ctcgacaccgcgatggcgctggagggcctcacccggcaggtcggcgtccacgcggcgggc
gtcgtcatcgccgacggcgacctcaccgacaacgtccccctgacgcgggacgacagcggc
ggcgtcgtcacccagtggtcgatggaacacctctccgaggtcggcatgctgaagatggac
ttcctcggcctgaagaccctcaccgtcatcgacgactgcctgaagatggtcgagaagaac
ctcgggaagaagatcgtccccgccgacatccccctggacgacgcccgcacctacgacctc
atctccgccgcccagaacgtcggcgtcttccagctcgaatcgaaggggatgggcggcgcc
tgcgcctcggtgaagccgaagtgcatcgaggacatcatcgcgctcgtcgccctctaccgg
cccggcccgatggagaacatccccctcttcggcgaccgcaagcagggccgcgtcccgctc
gagtacccgcacaagctcctcgaggcgagcctcagggaaacctacggcatcatcgtctac
caggagcaggtgatgcaggcggcgaacatcctcgccggctactccctcggccaggcggac
ctcctccgccgcgcgatgggaaaaaagaagttcgaggagatggagaagcagcgcgccctc
ttcgtgaagggctgcgccgagaccaaccagatccccgccgaggaggcgaacaccctcttc
gacacgctcgagaaattcgccggatacggcttcaacaaggcccacgccgcctgctacggc
gtcctcgcctaccacaccgcgtggttgaaggcgaactacccggaggagttcctcgccgcc
ctcatgtcgaacgagctcggcaagaacgagaagatcgccgaattcgtcgacgaggcccgc
aagatggggatccccgtcctcccgcccgacatcaacgccagcttcggccccttcaccgtc
gagaagatcgagggaaagaagaagcgggcgatccgctacggcctcgcgggcgtgaagaac
gtcggctccggcgcgatcgagcagatcgtcgccgcgcgggaaaagagcggccccttcacc
gacctcaagaccttctgcctctgcgtcgatccccacctcctcaacaagcgcctcatggag
agcctcgtccgcgtcggcgcgttcgacagcttcggcaagaaccgcgccaccaccgaggcc
tccctcgacggagccctcggcgccgcctcgagcaccgcgaaggaaaaggcgagcggccag
acctccctcctcgacatgctcgacgaggcccccgccctcgacgccgcctcggcggggcgc
ggcgtccaggaccagcccgaatatccctccgaagacctcctcggctacgagaaggaactc
ctcggcttctacttctccggccatcccctcgacaagcacctcccccgcctccgccccttc
cagaccaccaccgtcgacaagctcgccggaatcgaggaggggacccccgtccgcgtcgcc
gggatgatcacgaagttcgaggtcaagatcagcaagaagaccgggaacaacctccccatc
gtcaccttcgaggaccagaccgggaagatcgagttcatgctcatgggcggcctctacgag
aagatggagaagcccccggcggcgaaagacctcgtcgtcttcaccgccaacgtcaccttc
cgcggcgaggacccgagcctccgtgtccaggactactactccctcgacgaggccgagagc
aagctgctgaagggcctcaccatcgacatcgacctcgacggctgggacctcgtgaaatgg
gacagcctccaccagctcatcctcgaccaccccggccccgcccgcctctacttccgctgc
acccgcggccagaacggcagccgccggacgaccgtcctggagccgagcgacctcttcacc
gtcgccccccgcctccagttcatggactcgctgaaaagcctcctcggcggcccgaactac
gagatcgtgccgagccgcgacctcccccgcgcgcgaaagcccttcgtgcggaagccggag
ggcgggtag
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