Verrucomicrobium sp. GAS474: SAMN05444156_0879
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Entry
SAMN05444156_0879 CDS
T09813
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMN05444156_0879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
veg03019
]
SAMN05444156_0879
03400 DNA repair and recombination proteins [BR:
veg03400
]
SAMN05444156_0879
Enzymes [BR:
veg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMN05444156_0879
Messenger RNA biogenesis [BR:
veg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMN05444156_0879
DNA repair and recombination proteins [BR:
veg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMN05444156_0879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HEM4
Motif
Other DBs
NCBI-ProteinID:
SDT93533
UniProt:
A0A1H2EEV6
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All DBs
Position
I:complement(1048473..1050323)
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AA seq
616 aa
AA seq
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MSSAASIAPTPHTILKEVFGYDTFRPLQEEIVGEILAGRDAFALLPTGGGKSLCFQLPAL
LLPGLTVVISPLIALMKDQVDSLVASGVAATYLNSTLDGDEARARFRALHKGEVKLLYIA
PERLVLPGMLENLAEWNVSLLAVDEAHCISEWGHDFRPEYRRIAELRDRFPGVPVLALTA
TATERVRADISRQLRLDGARHFVASFNRPNLTYRVSPKAGAYATLLRFLAGRRGEAGIIY
CQSRKATEEVAGKLEKDGISAVPYHAGLNPATRAKNQELFLRDEVRVVCATIAFGMGINK
PNVRFVVHYDLPKNVEGYYQETGRAGRDGLPAECLLLFSAGDAIKQRNFIDEKTDPDERK
AAHAQLRQMIDYAEDDGCRRRALLGYFAEKWEGECQACDNCNEPRESYDATVPAQKFLST
VFRVRQSGGFGVGLTHLAEILTGGKGEKLLRWGHDQLSTYGIGKDLPRAEWQEIGRQLIR
AGFARQTEGEISVVELTEAGRTVLRDRTPIRLVKPVAASARAMAEKEGRAPRAASAAGAI
ACDEQLFQRLRTLRKELADQRNVPAYVIFSDVTLRLMARDLPFSLEEIGQIGGVGQKKLA
EFGEAFLESIRTYRND
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgccgcctccatcgccccgaccccccacacgatcctgaaggaggtcttcggc
tacgacacgttccgcccgctgcaggaagagatcgtcggggagatcctcgccgggcgcgac
gccttcgcgctgctgccgacgggcggcgggaaatcgctctgcttccagctccccgcgctc
ctcctgccgggactcaccgtcgtcatctcccccctcatcgcgctgatgaaggaccaggtc
gattccctcgtcgcctcgggcgtcgccgccacctacctcaactcgaccctcgacggcgac
gaggcccgcgcccgcttccgcgccctccacaagggcgaggtgaagctcctctacatcgcg
ccggagcggctcgtcctccccggcatgctggaaaacctcgccgagtggaacgtctccctc
ctcgccgtcgacgaggcccactgcatcagcgagtggggccacgacttccgccccgaatac
cgccgcatcgccgagctgcgcgaccgcttccccggcgtccccgtcctcgccctcaccgcc
acggcgaccgagcgggtccgcgccgacatctcccgccagctccgcctcgacggcgcgcgc
cacttcgtcgccagcttcaaccggcccaatctcacctaccgcgtctcgccgaaggccggg
gcctacgccaccctcctccgcttcctcgccgggcggcggggcgaggccgggatcatctac
tgccagagccgcaaggcgacggaggaggtcgccgggaagctcgagaaggacggcatcagc
gccgtcccctaccacgcgggcctgaaccccgcgacgcgggcgaagaaccaggagctcttc
ctccgcgacgaggtccgcgtcgtctgcgccaccatcgccttcggcatggggatcaacaag
ccgaacgtccgcttcgtcgtccactacgacctcccgaagaacgtcgagggctactaccag
gagacgggccgcgccgggcgcgacggcctccccgccgagtgcctcctccttttcagcgcg
ggcgacgcgatcaagcagcgcaacttcatcgacgagaagaccgatcccgacgagcggaag
gccgcccacgcccagctccgccagatgatcgactacgccgaggacgacggctgccgccgc
cgcgccctcctcggctacttcgccgagaaatgggaaggcgaatgccaggcgtgcgacaac
tgcaacgagccgcgcgagagctacgacgcgaccgtccccgcgcagaaattcctctccacc
gtcttccgcgtccggcagtcggggggcttcggcgtcggcctcacccacctcgccgagatc
ctcaccggcggcaagggcgagaagctcctccgctggggccacgaccagctcagcacctac
ggcatcggcaaagacctcccccgcgccgagtggcaggagatcggccgccagctcatccgc
gccgggttcgcccgccagaccgagggggagatctcggtcgtcgagctgaccgaggccggg
cggaccgtcctccgggaccggaccccgatccgcctcgtgaagcccgtcgccgcctcggcc
cgcgccatggcggaaaaggaaggccgcgccccccgcgccgcctccgccgccggggccatc
gcctgcgacgagcagctcttccagcgcctccgtaccctccgcaaggaactggccgaccag
cggaacgtcccggcttacgtcatcttctccgacgttaccctccgcctcatggcgcgggac
ctgccgttcagcctcgaggagatcggccagatcgggggggtggggcagaagaagctggcg
gaattcggcgaggcgtttttggagtcgattcggacgtatcggaatgattga
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