Verrucomicrobium sp. GAS474: SAMN05444156_1030
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Entry
SAMN05444156_1030 CDS
T09813
Name
(GenBank) DNA-binding transcriptional regulator, LysR family
KO
K21703
LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
Organism
veg
Verrucomicrobium sp. GAS474
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
veg03000
]
SAMN05444156_1030
Transcription factors [BR:
veg03000
]
Prokaryotic type
Helix-turn-helix
LysR family
SAMN05444156_1030
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Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_5
PBP_like_2
HTH_24
Motif
Other DBs
NCBI-ProteinID:
SDT95376
UniProt:
A0A1H2EJR9
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Position
I:complement(1257868..1258776)
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AA seq
302 aa
AA seq
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MSAPLDSRQIRAFVTLARTGSFTRTGRELHLSQSAVSHSLKALEEDLACRLFERTGRSVR
LTPAGEELLVHADKIVAEMAVARERLGQLNRWGHGRIQVGVTTTACQYILPGVLREFKES
FPHCAVQIEPGDTSALLDLLREGRVDFAIGLEPRDKTAVEFRPLFVDELVCAVSSLHPWA
KLGHLDRETLHEQRFILYSKNSYVIAAIEEYFRAEKMSLPVSMELGSVEAIKELVKLGLG
VSILAPWAIRKELEEGSLVAIPLGKKKLRRQWGILLRKSQRLSLAHETFIGLCKTVTENF
GT
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcccccctcgatagccgtcagatccgcgccttcgtcaccctcgcccgcaccggg
tcgttcacccgcacgggacgggagctccacctttcccaatcggcggtcagccactccctg
aaggcgctggaggaagacctggcctgccgcctcttcgagcggaccggacggagcgtccgc
ctcaccccggcgggggaggaactcctcgtccatgccgacaagatcgtcgccgagatggcc
gtcgcgcgggagcgcctcgggcagctcaaccggtggggccacggacggatccaggtcggc
gtcacgacgacggcctgccagtacatccttccgggcgtcctccgcgagttcaaggagagc
ttcccccactgcgccgtccagatcgagccgggggacacctccgccctcctcgacctcctg
cgcgagggccgcgtcgacttcgccatcggcctcgagccccgggacaagaccgccgtcgag
ttccgccctctcttcgtcgacgagctcgtctgcgccgtcagctccctccatccgtgggcc
aagctcggccacctcgaccgcgagaccctccacgagcagcgtttcatcctctactccaag
aacagctacgtcatcgccgccatcgaggaatacttccgcgccgagaagatgtccctcccc
gtctcgatggaactcggcagcgtcgaggccatcaaggagctggtgaagctcggcctcggc
gtcagcatcctcgccccctgggccatccggaaggaactggaggagggctccctcgtcgcc
atccccctcgggaaaaagaagctccgccgccagtggggcatcctcctccgcaagagccag
cgcctcagcctcgcccacgagaccttcatcggcctctgcaagaccgtcaccgagaacttc
ggtacttga
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