Verrucomicrobium sp. GAS474: SAMN05444156_1563
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Entry
SAMN05444156_1563 CDS
T09813
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
veg
Verrucomicrobium sp. GAS474
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
veg03400
]
SAMN05444156_1563
Enzymes [BR:
veg01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
SAMN05444156_1563
DNA repair and recombination proteins [BR:
veg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
SAMN05444156_1563
Prokaryotic type
SAMN05444156_1563
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
SDU03295
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All DBs
Position
I:complement(1862816..1864267)
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AA seq
483 aa
AA seq
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MPSPALVWFRADLRLADNPALQAALARGGPVIPVYIDARGEEEAWAPGGASRWWLHHSLQ
ALGDSLRERGSRLVIREGASLGTLQALLKETGAEALFWNRRYEPALIARDTRIKETLRKA
GHAVETFNAALLHEPWTIANQSGKPFQVFTPFWKHALGKADPAAPLPAPDRLPAPKAWPE
SIPLAALELEPTIPWHHGLAAAWHPGEAGAAERVESFLLAASENYAGDRDRPDLPGTSRL
SPHLHFGEIGPRQIWHAYRRHAARIAPASPLWRGSRYLTEIGWREFSHHLLYHFPHTAEE
PLREPFAAFPWVKDKARLRAWQKGLTGYPVVDAGMRELWATGWMHNRVRMIAASFLVKDL
LISWREGAAWFWETLVDADLAQNTLGWQWSAGCGADASPYFRIFNPVTQGEKFDPLGRYV
RRWCPELAGLPGAWLHRPWEAPGDLLARAGIVLGRDYPKPIVDHAVARKNALAALSSIRT
LET
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgccctcccccgccctcgtctggtttcgcgccgacctccgcctcgccgacaatcccgcc
ctccaggccgcgctggcccggggcggcccggtcattcccgtctacatcgatgcgcgcggc
gaggaggaggcgtgggcgcccggcggagcctcgcgctggtggctccatcattcattgcag
gcgctcggcgactcgctccgcgagcggggcagccgcctcgtgatccgcgagggggcgagc
ctcgggacgctccaggccctcctgaaggagaccggggccgaggcccttttctggaaccgc
cgttacgagcccgcgctcatcgcccgcgatacgcggatcaaggagacgctccgcaaggcg
ggccacgccgtcgagaccttcaacgccgccctcctccacgagccgtggaccatcgccaac
caaagcgggaagccgttccaggtcttcactccgttctggaagcacgccctcggcaaggcc
gatcccgccgcccccctccccgcgcccgaccgtctccccgcgccgaaggcgtggccggaa
tcgattcccctggccgcgctggaacttgagccgacgatcccctggcaccacggcctcgcc
gccgcctggcatccgggcgaggccggggcggccgagcgggtcgagagcttcctcctcgcc
gcctcggaaaactatgcgggggaccgcgaccggcccgatctcccagggacctcgcgcctc
tccccccatctccacttcggcgagatcggcccgcgccagatctggcacgcctaccgccgc
cacgccgcccgcatcgcccccgcctccccgctctggcgcggctcccgctacctcaccgag
atcggctggcgggagttctcccaccacctcctctaccacttcccccacaccgccgaggag
ccgctccgggaacccttcgccgccttcccctgggtgaaagacaaagcccgcctccgcgcc
tggcagaagggcctcaccggttaccccgtcgtcgacgccgggatgcgggaactctgggcg
accgggtggatgcacaaccgggtgcggatgatcgccgcctcgttcctcgtgaaggatctc
ctcatttcgtggcgggagggggccgcatggttctgggagacgctagtcgatgccgatctc
gcccagaacaccctcggctggcagtggagcgccgggtgcggggccgacgcctcgccctac
ttccgcatcttcaacccggtcacgcagggcgagaaattcgatcccctggggcgctacgtc
cgccggtggtgtcctgagctggcggggctgcccggcgcatggcttcatcgcccctgggag
gccccgggcgatctcctcgcccgcgccgggatcgtcctcgggcgagactatccgaagccg
atcgtcgaccacgccgtcgcgcggaagaacgccctcgccgccctcagttccatccgcacc
ctcgaaacctga
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