Verrucomicrobium sp. GAS474: SAMN05444156_1607
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Entry
SAMN05444156_1607 CDS
T09813
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMN05444156_1607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
veg03019
]
SAMN05444156_1607
Enzymes [BR:
veg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMN05444156_1607
Messenger RNA biogenesis [BR:
veg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMN05444156_1607
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
HEM4
AAA_19
WHD_GDS1
Motif
Other DBs
NCBI-ProteinID:
SDU03990
LinkDB
All DBs
Position
I:1909779..1911212
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AA seq
477 aa
AA seq
DB search
MTTPLVPVTDVTFASLKLCEPLQQALAEKNYIHPSPIQAGAIPHLLEGRDLVGIAQTGTG
KTAAFALPILHRLAANPKVAGPRQMRVLILTPTRELATQIGQSFVSYGKHLRLSKAVIFG
GVGQGPQVTALRRGLDVVIATPGRLLDLVQQRHADLSQVEVFVLDEADRMLDMGFIHDIR
KILAILPANGKRQSLLFSATMPDTIQEIAAKLLHNPARVEVTPVATTAERIDQHLCQVSK
DNKPRLLVHLLQKEHTEGLVLVFVRMKHGANRLVDRLAIDGIKADAIHGNKSQGARQRAL
ENFRDGKVRVLVATDIAARGIDVKGITLVVNYDLPEEPESYVHRIGRTARAGKEGVAIAF
CAPDERGLLRDIERTIRQPIPLRKEHPFAPTAAEAAAALHVPDAPRGGGGGGRRGGGGGG
NRGGGRSFGGGGGGGRSSSGGRPSGGGQGHSGPRSFSPRSSSGGGGQHRSPGGARGR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaccacccctctcgtacccgtcaccgatgtgacgtttgcctccctcaagctttgcgag
cccctccagcaggcgctcgccgaaaagaactacatccacccctcgccgatccaggccggg
gcgatcccccacctcctcgaaggccgcgacctcgtcggcatcgcccagaccgggaccggg
aagaccgccgccttcgcgctgccgatcctccaccgcctcgccgcgaacccgaaggtcgcc
ggaccgcgccagatgcgcgtcctgatcctcacgccgacgcgcgagctcgccacccagatc
ggccagagcttcgtctcctacgggaagcacctccgcctctcgaaggccgtcatcttcggc
ggcgtcggccaggggccgcaggtcaccgccctccgccggggcctcgacgtcgtcatcgcg
acgcccggccgcctcctcgacctcgtccagcagcgccacgccgacctctcccaggtcgag
gtcttcgtcctcgacgaggccgaccggatgctcgacatgggcttcatccacgacatccgc
aagatcctcgccatcctccccgccaacgggaaacggcagtccctcctcttctccgcgacg
atgcccgacaccatccaggaaatcgccgcgaagctcctccacaaccccgcccgcgtcgag
gtgacccccgtcgccaccaccgcggaacggatcgaccagcacctctgccaggtctccaag
gacaacaagccccgcctcctcgtccacctcctccagaaggaacacaccgagggcctcgtc
ctcgtcttcgtccggatgaagcacggcgcgaaccgcctcgtcgaccgcctcgccatcgac
ggcatcaaggccgacgccatccacgggaacaagtcgcagggagcccgccagcgcgccctc
gagaacttccgcgacggcaaggtccgcgtcctcgtggcgaccgacatcgccgcccgcggc
atcgacgtgaagggaatcaccctcgtcgtgaactacgacctccccgaggagcccgagtcc
tacgtccaccgcatcggccgcaccgcccgcgcgggtaaagagggcgtcgccatcgccttc
tgcgcccccgacgagcgcggcctcctgcgcgacatcgagcggaccatccgccagccgatc
cccctccgcaaggaacaccccttcgcgccgaccgccgccgaagccgcggctgccctccac
gtccccgacgcgccccgagggggcggcggcggtggccgtcgcgggggtggcggtggcggt
aaccgtggcggcggtcgctccttcggtggtggtggcggcggtggccgcagcagctccggc
ggccgtccctcgggcggcggccagggccactccggcccccgcagcttctccccccgctcc
agcagcggcggcggcggccagcaccgcagccccggcggcgcgcgcgggcggtag
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