Verrucomicrobium sp. GAS474: SAMN05444156_1884
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Entry
SAMN05444156_1884 CDS
T09813
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAMN05444156_1884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
veg03021
]
SAMN05444156_1884
Transcription machinery [BR:
veg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMN05444156_1884
BRITE hierarchy
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
ABC_tran_CTD
Motif
Other DBs
NCBI-ProteinID:
SDU08746
UniProt:
A0A1H2FNB0
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All DBs
Position
I:complement(2245395..2247386)
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AA seq
663 aa
AA seq
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MPKAGKPTKKTSSIPSKKAPTPAKAKAAKPAVKTQGKPAAKAKAPASKEKPKTPVKAPAP
KAAAKPAKASAKETEKEKPKQTVPKEAPAIGGAAARVAAGGALSLDDRDASAKLSAIWAQ
HPERQDRLRELVKLAKEQGYLTFDDLNDGLPEGVGPDEIDAVLVFLRNLEINVIDSSEVD
NLKQPVAAEEEAVEEDKEAKLDILDDPVRMYLKQMGQVPLLTREQEVEISKRIEDAELMV
QKGLNRLGFIAREYLNLAHKLEQGRERFDRIIQDKKIEGREKYMRSLKGLTRSVETSSDK
LDALYAKLAKAGTGPKAAALQKEYDKQQAALERLFTKFFYKQKVIEDFAAISDAHFQRLE
EVEAEKAQLEKSKSRSKETLSRIADLNHQIADIETQSRMSIALYRKEHLEMKEWLRKALR
AKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWW
IRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEFGREPTPEEISDEIQMAVERV
RAILKMAQQPISLQAQVGDSDDTTFGDFIEDKTAENPSEMTAYALLKEKIKHVLHTLTER
ERAVIEQRFGLVDGYSRTLEEVGRQFRVTRERIRQIEAKALRKMRHPTRLRHLHGFLEAE
RSF
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagctggtaagcccaccaaaaagacctcctcgatcccctcgaaaaaggccccc
actcccgcgaaagccaaagccgccaagccggcggtgaagacccagggcaaacctgccgcc
aaggccaaggcacccgccagcaaggaaaagccgaagacccccgtcaaggcgcccgccccg
aaggccgcggccaagcccgcgaaggcgtcggccaaggaaaccgaaaaggaaaagccgaag
cagaccgtgccgaaggaagcgcccgccatcggcggagccgccgcccgcgtcgccgccggc
ggagccctctccctcgacgaccgcgacgcctcggcgaagctctccgccatctgggcgcag
catcccgagcgccaggaccgcctccgcgaactcgtcaagctcgccaaggaacagggctac
ctgaccttcgacgacctcaacgacggcctccccgaaggggtcggccccgacgagatcgac
gccgtcctcgtcttcctccggaacctcgagatcaacgtcatcgacagctccgaggtcgac
aacctcaagcagcccgtcgccgccgaggaggaagccgtcgaggaggacaaggaagccaag
ctcgacatcctcgacgaccccgtccggatgtacctgaagcagatgggccaggtccccctg
ctcacccgcgagcaggaggtcgagatctccaagcggatcgaggacgccgagctcatggtc
cagaagggcctgaaccgcctcggcttcatcgcccgcgaatacctcaacctcgcccacaag
ctggagcagggccgcgagcgcttcgaccggatcatccaggacaagaagatcgaggggcgc
gagaagtacatgcgctccctgaagggcctcacccgcagcgtcgagacctcctccgacaag
cttgacgccctctacgcgaagctcgccaaggccggcaccggcccgaaggccgccgccctc
cagaaggagtacgacaagcagcaggccgccctcgagcggctcttcacgaagttcttctac
aagcagaaggtcatcgaggacttcgccgccatcagcgacgcccatttccagcgcctcgag
gaagtcgaggccgagaaggcccagctcgagaagagcaagtcccggagcaaggagaccctc
tcccgcatcgccgacctgaaccaccagatcgccgacatcgagacccagtcccgcatgtcg
atcgccctctatcgcaaggagcacctcgagatgaaggagtggctccgcaaggccctccgc
gccaagaccgagatggtcgaggccaacctccgcctcgtcatctcgatcgcgaagaagtac
acgaaccgcggcctctccttcctcgacctcatccaggaaggcaacatgggcctcatgaag
gcggtcgagaagttcgagtaccgccgcggctacaagttctccacctacgccacgtggtgg
atccggcaggcgatcacccgctccatcgccgaccaggcccggacgatccgcatcccggtc
cacatgatcgagacgatcaacaagctgatgcgcgtgcagaagcagctggtccaggaattc
ggccgcgagccgacgcccgaggaaatctccgacgaaatccagatggccgtcgagcgcgtc
cgcgccatcctcaagatggcccagcagccgatctccctccaggcccaggtcggggacagc
gacgacacgaccttcggcgacttcatcgaggacaagaccgccgagaatccctccgagatg
acggcctacgccctcctcaaggagaagatcaagcacgtcctccacaccctcacggagcgc
gagcgcgccgtcatcgaacagcgcttcggcctggtcgacggctactcccgcaccctcgag
gaagtcggccgccagttccgcgtcacccgcgagcggatccggcagatcgaggccaaggcc
ctccgcaagatgcgccacccgacccggctgcgccatctgcacggctttttggaagccgag
cgctctttctaa
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