Verrucomicrobium sp. GAS474: SAMN05444156_2309
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Entry
SAMN05444156_2309 CDS
T09813
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAMN05444156_2309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
veg03021
]
SAMN05444156_2309
Transcription machinery [BR:
veg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMN05444156_2309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
SDU15789
LinkDB
All DBs
Position
I:complement(2715102..2715944)
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AA seq
280 aa
AA seq
DB search
MFKDDSESGMRIYLRQISQIPLLTREDEVRLAAKIKKGNQAARQQMIQANLRLVVKIAHD
YANYGLPLLDLVSEGNIGLMKAVDRFDPAKGGKLSTYAAWWIKQSIKRALANQSKTIRLP
VHLVDKIARLRRVAMRLSEEFGRDPTDEELAEEMELPVAKITHLRTASIRPASLDATVSQ
DEDSATLGEIVKDEAALSPYDLLQGSNLREVVREQLPLLDERERKILSLRFGLDGKKELT
LEEIGKKFKVTRERIRQLQNGGLRKILKAIETKDKGRKIE
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaggacgatagcgaatctggaatgcggatttacctccgccaaatcagccagatc
cccctcctcacccgagaagacgaagtccgcctggccgccaagatcaaaaaaggcaaccag
gccgcgcggcagcagatgatccaggccaacctccgcctcgtcgtcaagatcgcccacgac
tacgccaactacggcctccccctcctcgacctcgtctccgagggcaacatcggcctcatg
aaggccgtcgaccgcttcgaccccgccaagggcggcaagctcagcacctacgccgcctgg
tggatcaagcaatcgatcaagcgcgccctcgccaaccagagcaagaccatccgccttccc
gtccacctcgtcgacaagatcgcccgcctccgccgcgtcgccatgcgcctctcggaagaa
ttcggccgcgatcccaccgacgaggaactggccgaggaaatggagctgcccgtcgcgaag
atcacccacctccgcaccgcctccatccgccccgcctccctcgacgccaccgtcagccag
gacgaggacagcgccaccctcggcgaaatcgtcaaggacgaggctgccctcagcccctac
gacctcctccagggcagcaacctccgcgaagtcgtccgcgagcagctccccctcctcgac
gagcgcgagcggaaaatcctctccctccgcttcggcctcgacggcaaaaaggaactgacc
ctcgaggaaatcgggaagaaattcaaagtcacccgcgagcggatccggcagctccagaac
ggcggcctgcggaaaatattgaaggccatcgaaaccaaggacaagggaaggaaaatagaa
tga
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