Verrucomicrobium sp. GAS474: SAMN05444156_2603
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Entry
SAMN05444156_2603 CDS
T09813
Name
(GenBank) DNA helicase-2 / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg03420
Nucleotide excision repair
veg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMN05444156_2603
03430 Mismatch repair
SAMN05444156_2603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
veg03400
]
SAMN05444156_2603
Enzymes [BR:
veg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMN05444156_2603
DNA repair and recombination proteins [BR:
veg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMN05444156_2603
MMR (mismatch excision repair)
Other MMR factors
SAMN05444156_2603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
DEAD
ResIII
GpA_ATPase
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SDU20681
UniProt:
A0A1H2GMK1
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All DBs
Position
I:3052689..3054524
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AA seq
611 aa
AA seq
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MKLNPSQQAVVAARGERILVLAGAGTGKTATSVHWVADLIKGGSRRSQILMITFTRKAAN
EMAKRIESLISHVPKFGSGDKITVGTYHAVASILLRSEGEAFGLSNNTFSTLDESECQSI
WKSALKQCGIEGKHALFVPNRLQQMLSFSRNTGRPMSETLDENFGKHAKKMAKVVRTYEE
LKRAANVVDYDDLLVLWLERMRKDPAYAAKLRERWHYVLVDEMQDNNQLNQALLDALNPK
TLLVVGDANQSIYSFRGSDVSLIRQFATKRSDTVTYRLESNYRSGQGILDLANAVVAGTP
SALVLQSARTLEAAIDYHCYGGTGAEANGVIQWMQARIKAGAKPCENAVLARSSKALSEL
EVALNANRIRYKKYGGQTIADAAEVKDFISFLRVSHNLQDKIALLRALMQFPGIGEGTAA
KVISEHQGSLFGADYWPEPAKELPLWIEEIQSVKELPSKARILEDRIKPLILHNYPKDGE
ERLGTLHALVTSTEGEALANTSLVDFLDGFALSRSTNDFHPDDAVVLSTIHSSKGLEWDG
VCLIGSGSCQIPHPRSLDSGDIEEERRLFYVAVTRARQDLLLTFPKATDRGQDQKPSPFV
PPETKWKFFFS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactgaacccctcccagcaagccgtcgtcgccgcccgcggcgagcggatcctcgtg
ctggccggggccgggaccgggaagacggcgacgagcgtccattgggtcgccgacctgatc
aagggcggttcccggcggagccagatcctgatgatcaccttcacccgcaaggcggccaac
gagatggccaagcggatcgagagcctcatctcccacgtcccgaaattcggctccggggac
aagatcaccgtcggcacctaccacgccgtcgccagcatcctgctgcggagcgagggggag
gccttcggcctttccaacaacaccttctccaccctcgacgagtcggagtgccaatcgatc
tggaagtcggcgctgaagcagtgcggcatcgaagggaagcacgccctcttcgtcccgaac
cgcctccagcagatgctctccttctcccggaacacgggacgcccgatgtcggagacgctc
gacgagaacttcggcaagcacgcgaagaagatggcgaaggtcgtccgcacctacgaggag
ctgaagcgggccgcgaacgtcgtcgactacgacgatctcctcgtcctctggctcgagcgg
atgcggaaggatcccgcctacgccgcaaagctgcgggaacggtggcactacgtcctcgtc
gacgagatgcaggacaacaaccagctgaaccaggccctcctcgacgcgctgaacccgaag
accctcctcgtcgtcggcgacgccaaccagtcgatctacagcttccggggctccgacgtc
tccctcatccgccagttcgccacgaagcggagcgacaccgtcacctaccgcctcgaaagc
aattaccggagcggccaggggattctcgacctcgccaacgccgtcgtcgccggaaccccc
tccgccctcgtcctccagagcgcccggaccctcgaggccgcgatcgactaccactgctac
ggcggcaccggggccgaggccaacggcgtcatccaatggatgcaggcccggatcaaggcg
ggggcgaagccgtgcgagaacgccgtcctggcccgctcctcgaaggcgctcagcgagctc
gaggtcgccctgaacgcgaaccggatccgctacaagaaatacggcggccagaccatcgcc
gacgccgccgaggtgaaggacttcatctccttcctccgcgtctcccacaacctccaggac
aagatcgccctcctccgcgccctgatgcagttccccggcatcggcgaggggacggcggcg
aaggtcatctcggagcatcagggcagcctcttcggcgccgactactggcccgaaccggcg
aaggaactccccctctggatcgaggagatccaatcggtgaaggagctcccctccaaggcc
cgcattctcgaggaccggatcaagcccctcatcctccacaactacccgaaggacggcgaa
gagcggctcggcacgctccacgccctcgtcacctcgaccgaaggcgaggcgctggcaaac
acctctctcgtcgacttcctcgacggcttcgccctgagccgctcgacgaacgatttccat
cccgacgacgccgtcgtcctctcgacgatccattcctcgaaggggctggagtgggacggc
gtctgcctcatcgggagcggctcgtgccagatcccccatccccgctccctcgacagtggc
gacatcgaggaggaacgccgcctcttctacgtcgccgtcacccgtgcccggcaggatctc
ctcctcaccttcccaaaggcgaccgaccggggacaggaccagaagccctcccccttcgtc
cctcccgagacgaaatggaagttcttcttttcctaa
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