Verrucomicrobium sp. GAS474: SAMN05444156_2844
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Entry
SAMN05444156_2844 CDS
T09813
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg02020
Two-component system
veg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SAMN05444156_2844
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAMN05444156_2844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
veg03021
]
SAMN05444156_2844
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
veg02035
]
SAMN05444156_2844
Transcription machinery [BR:
veg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMN05444156_2844
Bacterial motility proteins [BR:
veg02035
]
Flagellar system
Flagellar assembly proteins
Stator
SAMN05444156_2844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r4_2
IF2_N
MGTL
UPF0122
MarR
HTH_23
Sigma70_ECF
HTH_28
Sigma54_DBD
DprA_WH
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
SDU24781
LinkDB
All DBs
Position
I:complement(3319208..3319993)
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AA seq
261 aa
AA seq
DB search
MDPQPSPLPRRAVVPPPPPPVKRTEEERDTLIRSLLPMVNFVVARMGLYLPPHIAQDDLI
SAGVMGLLDAVDRYDPSRGTTLKTYCTFRIRGQILDELRRLDWVPRSVHKDARTLEAAQD
AAAQRLGREPTEDELAKEMGMSVKDLLEMLDRIRPVSYFSLQEPVFNSEEGDSLSHEDVV
ADPTSLTPFASLLNEEDKAILRMTMEKLPVQQLHVLTLYYMENLRLKDIAEILNITESRV
SQVHTLAITRLRSTFLKERKR
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggacccgcaaccctctcctcttccccgccgggcggtcgtgccgccgcccccgccgccc
gtgaagcggaccgaggaggagcgcgacacgctgatccggtccctcctgccgatggtgaac
ttcgtcgtcgcccggatggggctctacctgccgccccacatcgcgcaggacgacctcatc
agcgcgggcgtcatgggcctcctcgacgccgtcgaccgctacgatccctcccgcgggacg
acgctgaagacctattgcaccttccgcatccggggccagatcctcgacgagctccgccgc
ctcgactgggtcccccgctcggtccacaaggatgcccggaccctcgaggccgcccaggac
gccgccgcccagcgcctcggccgggagccgacggaggacgagctggcgaaggaaatgggg
atgagcgtcaaggacctcctcgagatgctcgaccggatccgtcccgtctcctatttttcc
ctccaggaaccggtcttcaacagcgaggagggcgactctctctcccacgaggacgttgtc
gccgatcccacttctttgaccccatttgcgagcttgctaaatgaggaggataaagccatt
ttacgcatgacaatggaaaaactgcccgtgcagcagctccatgtcctgacgctgtattac
atggaaaaccttcgcctcaaagacatcgccgagatcctgaatatcacggaatcccgtgtc
tcccaggtgcatacgctggcgatcacccggctccgttcgaccttcctgaaggagcggaag
cggtaa
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