Verrucomicrobium sp. GAS474: SAMN05444156_2870
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Entry
SAMN05444156_2870 CDS
T09813
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMN05444156_2870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
veg03019
]
SAMN05444156_2870
Enzymes [BR:
veg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMN05444156_2870
Messenger RNA biogenesis [BR:
veg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMN05444156_2870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
SDU25242
LinkDB
All DBs
Position
I:complement(3339932..3341137)
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AA seq
401 aa
AA seq
DB search
MSFQEFGLSEAIVHGVQCLGYVDPTPIQLRAIPAVLSGKDLIAAAQTGTGKTAAFGLPIL
SRLGDHQKGGPRVLVLEPTRELAAQVDEAFRDFIRYTNLKVTALFGGVGYGSQEEALASG
VDIVVATPGRLLDHLEKGTLKLGGVRHLVLDEVDRMLDMGFIPDVRRIVGATPTSEEGRQ
SLLFTATMPPEIERLASFVLKEPEVIEIGGRRSPAETVSHYFYPVSVMQKHELLQALLEK
TSYHSVIIFSRTKAGADVIAARLEESGHSVAVLHSDRSQGERTEALAGFKNGTFEVLVAT
DLAARGIDIQGVSHVINFDVPLHAEDYVHRIGRTGRADTTGDAFTLITAEEIKEVESIER
FIGQKVERQKLEEFPYRYTALFSTTPATAKPRKKIGVRRKR
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttcaggaattcggcctttccgaggccatcgttcacggagttcagtgcctgggt
tatgtcgacccgacgccgatccagctccgtgccatcccggccgtcctgtccggcaaggat
ttgatcgcggccgcccagaccggcacgggcaagaccgccgccttcggcctccccattttg
agccgcctcggcgaccaccagaagggcggaccccgggtcctcgtcctcgagccgacgcgg
gaactcgccgcccaggtcgacgaggcgttccgcgacttcatccgctacacgaatctcaag
gtcacggcactcttcggcggcgtcggctacggcagccaggaagaggccctcgcctcgggc
gtcgacatcgtcgtcgcgacccccggccgcctcctcgaccatctggaaaaggggaccctg
aagctcggcggcgtccggcacctcgtcctcgacgaggtcgaccggatgctcgacatgggc
ttcatccccgacgtccgccggatcgtcggcgcgacgccgacctcggaggagggccgccag
tcgctcctcttcaccgccacgatgcccccggagatcgagcgcctcgcttccttcgtcctg
aaggagcccgaagtgatcgagatcggcggccgccgctcccccgccgagaccgtcagccac
tacttctatcccgtctcggtgatgcagaagcacgagctgctccaggcgctcctcgaaaag
acgagctaccacagcgtcatcatcttctcccggacgaaggccggggccgacgtcatcgcg
gcccgcctcgaggaatcgggccactcggtcgccgtcctccattcggatcgctcccagggt
gagcgaaccgaggccctcgccgggttcaagaacgggaccttcgaggttctcgtcgccacc
gacctcgccgcgcgcggcatcgacatccagggagtcagccacgtcatcaacttcgacgtc
cccctccatgcggaagactacgtccaccgcatcggccggacgggccgcgccgacacgacg
ggcgacgccttcacgctgatcacggccgaagagatcaaggaagtcgagtcgatcgagcgt
ttcatcggccagaaggtcgagcggcagaagctcgaggagttcccttaccgctacaccgcc
ctcttctccaccacgcccgccaccgcgaagccgaggaagaagatcggcgttcgccgcaag
cggtaa
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