Verrucomicrobium sp. GAS474: SAMN05444156_3018
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Entry
SAMN05444156_3018 CDS
T09813
Name
(GenBank) rhamnogalacturonan endolyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
veg
Verrucomicrobium sp. GAS474
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
SAMN05444156_3018
Enzymes [BR:
veg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
SAMN05444156_3018
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GFIT
Motif
Pfam:
CBM-like
fn3_3
Rhamnogal_lyase
CarboxypepD_reg
EMC7_beta-sandw
SpaA
Y_Y_Y
CarbopepD_reg_2
Motif
Other DBs
NCBI-ProteinID:
SDU27794
UniProt:
A0A1H2H7J2
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All DBs
Position
I:3502956..3505118
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AA seq
720 aa
AA seq
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MNTHPSPFHSAKLGLALLLVVSATLSTRAADDVVPVVAPPTVSSPVTVKDTPTVWILDNG
IVKATVSKKNGNMVQLTYRGVDLIGRGGNWEETPSGEVKASLTIDPASTGGDRAEISLKG
VNGKLDIETRYCMERGVSGFYTYGIFTHKADYPEVGIGEGRFCIEGRPVMDWLSVDADRN
MLMASGQDFEAGPVIHAKEQHILGTGVYKNSVEHKYNYCAIMYRTPAWGWSSTKEHIGLY
FMNPSMEYIGGGSEKLDLLSHLSATMLDYWTSGHYAGGTNVHIPTGEEWNKVVGPIFVYC
NTLANPRVPSQADLDALAATSGSGNPSVPDAWRQNGLALWQDAVAQAKIQKAKWPFDWVN
GVDYPKKAERGTVTGQFILDDPQAATAKLPNLTVGIAHPDYQGSGSSFQLRAGNGTLVTW
PHDGNYYQFWADGTEDGKFTIENIRPGTYTLHAFANGVLGEYEQANVTVAAGQTVDLGQI
KWTPVRYGKQVWEIGYPNRNASEFFKGDGTNFWRWGWCVRYPLLFPNDITYTVGQSDCSK
DWFFEQVPHGENRSWLNPAAEDPANQPFGWVMTGTEGKDMWKTIGHGKDTTWTIKFTTEA
PSRGTATLRLALAGADSTTLLVAVNGKKVGGIRPVSTNAIRYNTDKGVWQEKSLPFDASV
LRSGENQMTLTVPAGDLTSGVVYDYLRLEVDPDKTPPPPGSNDVTPSTAPHGKQDKADEE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgcacccctcccccttccattccgcgaaacttggtttggccctgctcctggtc
gtctccgcgaccctgtcgacgagggcggctgacgatgtcgtgccggtcgttgctcccccg
accgtttcgtcgcctgtcaccgtcaaggacacccccaccgtctggatcctcgacaacggc
atcgtcaaggcgaccgtgagcaagaagaacggcaacatggtccagttgacctatcgcggc
gtcgatctgatcggtcgcggcggcaattgggaggagacgccatcaggcgaggtcaaggcg
tcgctgacgatcgatcccgcctctaccggcggggaccgggccgagatctccctgaaggga
gtgaatggcaaactcgacatcgagacccgctactgcatggaacgcggcgtcagcggcttc
tacacctacggcatcttcacccacaaggccgactaccccgaagtcggcatcggcgaaggc
cgcttctgcatcgagggcaggcccgtcatggactggctctccgtcgacgccgaccggaac
atgctgatggcctccggccaggacttcgaggcggggcccgtcatccacgccaaggagcag
cacatcctcggtaccggcgtctacaagaactcggtcgagcacaagtacaactactgcgcg
atcatgtatcgaacccccgcctggggctggtcgagcaccaaggagcacatcggcctctac
ttcatgaacccgtcgatggaatacatcggcggcggctccgagaaactcgacctcctctcc
catcttagcgcgaccatgctcgattactggacctccggtcactacgccggagggacgaac
gtccatatccccacgggcgaagaatggaacaaggtcgtcggccccatcttcgtctactgc
aacaccctcgccaacccccgcgtcccctcccaggccgatctcgacgcgctggcagccaca
tccggcagcggcaacccgtccgtccccgacgcctggaggcagaacggcctcgccctgtgg
caggacgccgtcgcccaagcaaagattcagaaggccaagtggcccttcgattgggtcaac
ggcgtcgactaccccaagaaggccgagcgcggcaccgtcaccggccagttcatcctcgac
gatccccaagccgccaccgccaagcttcccaacctcaccgtcggcatcgcccatccggac
tatcaaggcagcggctcctccttccagctccgggcgggcaacggcaccctcgtcacctgg
ccccacgacgggaactactaccagttctgggccgacggaaccgaagacggcaagttcacc
atcgagaacatccgtcccggcacctatacccttcacgccttcgccaacggcgtcctgggc
gaatatgagcaggccaacgtcaccgtcgccgccggccagaccgtcgatctcggccagatc
aaatggacgcccgtccgctacggcaagcaggtgtgggagatcggctatcccaatcgcaac
gcgagcgagttcttcaaaggcgacggcacgaatttctggcgctggggctggtgcgtccgc
tatccgctcctcttcccgaacgacatcacctacaccgtcggccaaagcgactgctccaaa
gactggttcttcgaacaggtcccccatggagaaaaccggtcctggctcaacccggccgcc
gaagatcccgccaaccagcccttcggatgggtgatgaccggcaccgaaggcaaggacatg
tggaaaaccatcggccacggcaaggacaccacctggaccatcaagttcaccacggaggct
ccctcgcggggcaccgccaccctgcggctcgccttggcaggcgcggacagcaccaccctc
ctcgtcgccgtcaacggaaagaaggtgggcggcatccgtcccgtctccaccaacgccatc
cgctacaatacggacaagggcgtctggcaggaaaagagcctccccttcgacgcctccgtc
ctccgctccggcgaaaaccagatgacgctgaccgttcccgccggagacctcaccagcggc
gtcgtctacgactacctccgtctcgaggtcgatcccgacaaaacccctccccctcccgga
agcaacgacgtcactccctcgacagcgccccacggcaagcaggacaaagcagacgaagaa
taa
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