Verminephrobacter eiseniae: Veis_0578
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Entry
Veis_0578 CDS
T00460
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
vei
Verminephrobacter eiseniae
Pathway
vei02020
Two-component system
vei02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vei00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Veis_0578
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Veis_0578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vei03021
]
Veis_0578
Transcription machinery [BR:
vei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Veis_0578
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
Motif
Other DBs
NCBI-ProteinID:
ABM56362
UniProt:
A1WFF5
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All DBs
Position
647085..648665
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AA seq
526 aa
AA seq
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MKPGLSLRVSQHLTLTPQLQQSIRLLQLSTLELTQEIEQMLDENPFLERMSDEAPREEFG
LDSADTPAQADDYSADEVLFSAATGSSAEALPDADTPGSAADEPDWGGDGSVEMAPSDAE
WGGDAPASQHNDAEGDGIEATELAQSEESLAAFLHRQALALRLSEIDRAALYFLIESLND
DGYLEDSLEELASALAGPQNPEQIEELVHRFTVAQRLLQSLEPVGVGARNLAECLTLQLN
ALARERAPAADPQTVQTALRICQQPLQMLARRDLRRLTQVCGDSQEGTRAAMALIARLEP
HPGRRFANVQRNVIVPDVIVRKTGRANGRDGRQHFIVQINPDVLPRLRVHDIYAGALRGH
RGGAGHQGMQQRLQEARWFIKNIQQRFDTILRVSRAIVERQKNFFTHGELAMRPLVLRDI
ADELGLHESTISRVTTAKYMATPIGTYELKYFFGSGLGTETGGNASSTAVRALIRQFVAA
ESQAKPLSDSQLADLLKEQGIECARRTVAKYREALKIAPANLRRTL
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccggtctgtcactgcgcgtctcgcagcacctcacactgacccctcagttgcag
cagtcgatccggctgctgcaactgtccacgctcgaactgacgcaggaaatcgagcagatg
ctcgatgaaaacccgtttctcgaacgcatgtccgacgaggccccgcgcgaggagttcggc
ctggacagcgccgacacgccagcgcaagccgatgactacagcgccgacgaagtgctcttt
tccgccgcaaccggcagcagcgccgaagcgctccctgacgccgacaccccgggcagcgct
gcggacgagcccgactggggcggcgacggcagcgtggagatggcgcccagcgatgccgaa
tggggcggcgacgcgccggcgagccagcacaacgacgccgaaggcgacgggatcgaagcc
accgaactggcccagagcgaagaatcgctggccgctttcttgcaccgccaggcgctggcg
ctgcgcctgtccgaaatcgaccgcgccgcgctgtacttcctgatcgaatcgctcaacgac
gacggctacctggaagactcgctcgaagaactggccagcgccctggccggcccgcagaac
ccggagcaaatcgaagaactggtgcaccgcttcaccgtcgcccaacgcctgctgcaaagc
ctggaaccggtgggcgtgggcgcgcgcaatctggccgaatgcctgacgctacagctcaac
gccctggcacgggagcgggcgccagccgccgacccgcagaccgtgcaaaccgccctgcgc
atctgccagcagccgctccaaatgctcgcccggcgcgacctgcgccgcctgacccaggtc
tgcggcgacagccaggagggcacccgcgccgcgatggccctgatcgcccgcctggagccg
cacccggggcgccgctttgccaatgtgcagcgcaacgtcatcgtgcccgacgtgatcgtg
cgcaaaaccgggcgcgccaatgggcgcgacggccgacagcatttcatcgtgcagatcaac
cccgacgtgctgccccgcctgcgcgtgcacgatatctacgccggcgcgctgcgcggccac
aggggcggcgcaggccaccagggcatgcagcaacgcctgcaggaagcgcgctggttcatc
aagaacatacagcagcgcttcgacaccatcttgcgcgtctcgcgcgccatcgtcgagcgg
cagaaaaacttcttcacccacggcgaactggccatgcggccgctggtgctgcgcgacatc
gccgacgaactgggcctgcacgaatcgaccatcagccgcgtgaccaccgccaaatacatg
gccaccccgataggcacctacgaactgaaatactttttcggctcgggcctgggcaccgaa
accggcggcaacgcatcgagcaccgccgtgcgcgcgctgatccggcaattcgtcgctgcg
gaaagccaggccaagcccttgtccgacagccaactcgccgacctgctcaaagagcagggc
atagagtgcgcgcgccgcaccgtggccaagtaccgcgaggcgctcaagatcgcgccggcc
aatctgcgccggacgctttga
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