Verminephrobacter eiseniae: Veis_1425
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Entry
Veis_1425 CDS
T00460
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vei
Verminephrobacter eiseniae
Pathway
vei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Veis_1425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vei03019
]
Veis_1425
03016 Transfer RNA biogenesis [BR:
vei03016
]
Veis_1425
Enzymes [BR:
vei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Veis_1425
Messenger RNA biogenesis [BR:
vei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Veis_1425
Transfer RNA biogenesis [BR:
vei03016
]
Prokaryotic type
tRNA degradation factors
Veis_1425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABM57186
UniProt:
A1WHS9
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All DBs
Position
1580153..1582411
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AA seq
752 aa
AA seq
DB search
MTSGAQSAHVSDEIEGSVQGHRDGHGVVIRDDGQGDLYISPNEMRAVLHKDRVRARIVRQ
DRRGRPEGRVVEIIERPAQPIIGRLLQESGVWLVAPEDKRYGQDILIPKGATGVAKPGQV
VVVELTEPPALFGQPVGRITEVLGEVDDPGMEIEIAVRKYGVPHEFSVAGLAQAKGLPDK
VRAQDKKHRVNLCDIPLVTIDGEDARDFDDAVYCEPAKVGRAKGWRLLVAIADVSHYVET
GSAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPQVERLCMVCDMLVTARGEVPAY
QFYPAVMYSHARLTYTEVAAILANTRGPEAAKRQERVKDLLNLHDVYHALLLARRERGAV
DFETTETQIVCDENGRIEKIVPRIRNDAHRLIEEAMLAANVCSADFIVQGGQPGLFRVHE
GPTPEKQVLLRNYLKAMAVGLSISDEPKPAEFQAIAEATKDRPDAPQIHMMLLRSMQQAI
YTPVNSGHFGLAFDAYTHFTSPIRRYPDLLVHRVIKAILGKTQYQLPALPAPGEAQAKLA
KRLAAPGSKPRQQALGRAGLAWQAAGLHCSANERRADEASRDVEAWLKCKYMREHLGEEY
SGVVSAVTSFGIFVTLDAMYVEGLVHITELGGEYFKFDEARQELRGERTGIRYAIGARVR
VQVSRVDLDGRRIDFRLVREGEELPGGDGASGAARKTGGRSGGRKSAPGAAPSVSGTVAE
TPPKAPVKKKEKAVRKKAVAGQTGKARKPRRN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgacctccggcgcgcagtccgcgcatgtgtcggacgagatcgaaggcagcgtgcagggg
caccgggacgggcacggggtcgtcatccgtgacgacggccaaggcgacctgtatatctcg
ccgaacgagatgcgcgcagtgctgcacaaggaccgcgtgcgcgcgcgcatcgtgcgccag
gatcggcgcggccgcccggagggccgtgtggtcgagatcatcgaacggccggcccagccc
atcatcggccgcttgctgcaagaaagcggtgtgtggctggtagcgcccgaggacaagcgc
tatggccaggatatcttgatccccaagggcgccaccggcgttgccaagccggggcaggtg
gtggtcgtcgaactgaccgagccgccggcattgttcggccagcccgtgggccgcatcacc
gaagtgctcggcgaggtcgacgacccgggcatggagatcgagatcgcggtgcgcaagtac
ggcgtgccgcatgagttttctgttgccggcctggcgcaggccaagggcttgcccgacaag
gtgcgcgcgcaggacaagaagcaccgcgtcaacctgtgcgatatcccgctggtcaccatc
gacggtgaagatgcgcgcgactttgacgatgccgtgtattgcgagccggccaaggtcggc
cgcgccaagggctggcgtttgctggtggcgattgccgatgtcagccactatgtggagacc
ggcagcgcgatcgacattgacgcttacgaccgcgccaccagtgtctacttcccgcgccgc
gtgattccgatgctgcccgagaagctcagcaacggcctgtgctcgctgaacccgcaggtc
gagcgcctgtgcatggtttgcgacatgctggtcacggcccggggtgaggtgccggcctac
cagttctacccggccgtgatgtacagccatgcgcgcttgacgtacaccgaggtcgccgcc
attttggccaacacgcgcgggcctgaagccgccaagcgccaggagcgggtcaaggatttg
ctaaacctgcacgatgtctaccacgcgctgctgctggcccggcgcgagcgcggggcggtg
gatttcgagaccaccgagacgcagatcgtctgcgacgagaacgggcgcatcgaaaagatc
gtgccgcgcatccgcaacgatgcgcacaggctgatcgaagaggcgatgctggcggccaat
gtctgcagcgccgacttcatcgtccagggcggccagccggggctatttcgcgtgcacgaa
ggccccacgccggaaaagcaggtgctcctgcgcaactacctcaaggccatggcggtgggc
ctgtcgatcagcgatgagcccaagcctgcggagttccaggcgattgccgaggccaccaag
gatcggccagacgccccgcagatccacatgatgctgctgcgctcgatgcagcaggcgatc
tacacgcccgtcaacagcggccactttggcctggcgttcgatgcctacacgcatttcacc
agcccgatccggcgctatccggacctgctggtgcaccgggtcatcaaggccattttgggc
aagacgcagtaccagttgccggcgctgccggcaccgggcgaggcgcaggccaaactggcc
aagcggctggccgcgccgggcagcaagccgcgccagcaggcgctcggccgcgctggcctg
gcctggcaagctgcgggcctgcattgcagcgccaacgaacgccgggccgacgaggccagc
cgcgatgtcgaggcttggctcaagtgcaagtacatgcgcgagcatctgggcgaggaatac
agcggcgtggtcagcgcggtcaccagcttcggtatcttcgtgacgctcgacgcgatgtat
gtggagggcctggtgcacatcaccgaactggggggcgagtacttcaagttcgacgaggcg
cgccaggaactgcgcggcgagcgcaccggcatccgctatgcgattggtgcgcgggtgcgg
gtgcaggtcagccgcgtggatctggacggccgcaggatcgactttcgcctggtgcgcgag
ggcgaggaattgccaggaggggatggcgccagtggcgctgcgcgcaagaccggcgggcgc
tcgggagggcgcaagtcggccccgggggctgcgccatcggtcagcgggacggtggcagaa
acgcccccgaaggcgccggtcaagaagaaggaaaaggcggtcaggaaaaaagcggtcgcc
ggccagaccggcaaagcgcgcaagccgcgccgcaactga
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