Verminephrobacter eiseniae: Veis_2604
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Entry
Veis_2604 CDS
T00460
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vei
Verminephrobacter eiseniae
Pathway
vei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Veis_2604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vei03021
]
Veis_2604
03019 Messenger RNA biogenesis [BR:
vei03019
]
Veis_2604
Transcription machinery [BR:
vei03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Veis_2604
Messenger RNA biogenesis [BR:
vei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Veis_2604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABM58349
UniProt:
A1WL42
LinkDB
All DBs
Position
2946310..2947572
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEDLEIENTGRMRKQELMFAIIKKRAKTGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDAVN
GGPPEQNKHKVMFENLTPLFPKEQMRLEREIKGEENITGRIIDIIAPLGRGQRALIVAPP
KSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLNRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYSMDEIESMELMIKNMKATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggcactgcatgtgtctgaagtcctcaagcaagctgaagac
ctcgaaatcgaaaacaccggccgcatgcgcaagcaggagctgatgtttgccatcatcaaa
aagcgcgccaaaacgggcgagcaggtgtttgccgacggcgttctggaaatcctgcctgac
ggattcggctttctgcgcagccccgacaccagtttcaccgccagcaccgatgacatctac
atctcgcccagccaggtgcgccgcttcaacctgcacacgggcgacatgatcgaaggcgag
gtgcgcacgcccaaggatggcgagcgctactttgccctgaccaagctcgacgccgtcaac
ggcggcccgcccgagcagaacaagcacaaggtgatgttcgagaacctgacgccgctgttc
cccaaggagcagatgcggctggagcgcgaaatcaagggcgaggagaacatcaccggccgc
atcatcgacatcattgcgccgctgggtcgcggccagcgcgcgctgatcgtggccccgccc
aagagcggcaagacggtgatgatgcagcacatcgcgcacgcgatcacggccaacaacccc
gatgtgcacctgatggtgctgctggtcgatgagcgcccggaagaagtgaccgagatgcag
cgcacggtcaagggcgagatcatcgcctcgaccttcgacgagcccgctgcgcgccatgtg
catgtggccgaaatggtgatcgagcgcgccaagcgcctggtcgagctcaagaaagacgtg
gtgatcctgctggactccatcacccgcctggcccgcgcctacaacaacgtggtgccctcg
tcgggcaaggtgctgtccggcggggtcgatgccgccgccctgcaacgcccgaagcgcttt
ttcggcgccgcgcgcaaggtcgaagaaggcggctcgctgaccatcatcgccacggcgctg
gtcgacaccggcagccgcatggacgaagtgatctttgaagaattcaagggcaccggcaac
tgcgaaatccacctgaaccgccgcctgtacgaaaagcgcgtattccccgcgatcgaactg
aacaagagcggcacgcggcgcgaagaactgctgctggcgcccgagatcctgcaaaagacc
cgcatcctgcgccagttcatgtacagcatggatgaaatcgagtccatggaactgatgatc
aagaacatgaaggccaccaagaccaatgtggacttcttcgacatgatgcgccggggcggg
tga
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