Verminephrobacter eiseniae: Veis_4359
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Entry
Veis_4359 CDS
T00460
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vei
Verminephrobacter eiseniae
Pathway
vei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Veis_4359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vei03400
]
Veis_4359
Enzymes [BR:
vei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Veis_4359
DNA repair and recombination proteins [BR:
vei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Veis_4359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
IstB_IS21
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ABM60062
UniProt:
A1WR05
LinkDB
All DBs
Position
complement(4803423..4806947)
Genome browser
AA seq
1174 aa
AA seq
DB search
MRAPRPGGCGEFDTSVCMELPTLSPGKRFTLARPAGSADSLLLARLAERERAAGRATAIV
VADASDAQRLIDEFAFFAPALRCALFPDWETLPYDSFSPHQDLISERLATLWRIRQGQAD
VVLVPATTALYRLAPPAFLAGYTFHFALGQKLDAAQFKAQLTLAGYSHVSQVVSPGEYAV
RGGLIDLFPMGASVPYRVDLFDDEIDSIRSFDPDNQRSLHPVPEVRLLPGREFPMDEAAR
AKFRSRWRELIEGDPTKSRIYKDMGNGVATAGIEYYLPLFFDDTASMFDYLGSAAIVVLH
GDLEPVFQRFWQDTKERFRLTSADPERPALPPEALFLSIEQFYTRANAYAQLSLRPGAPE
QAGDGAFCRLGDLSVLRAADDPLARLQAHIRSTPRRVLLLAESAGRRESLLDFLRAAQID
PPVFDSLAAFQGAAGAPLGIATAALSVGFGAIAEGIDFVTETELFAAGPSTRRRKKQEQV
SDVEALIKDLAELNLGDPVVHSAHGIGRYRGLVHMDLGQPNPDGTPALQEFLHLEYADQA
VLYVPVSQLQQISRYTGVGADEAPLHKLGSGQWEKARRKAAEQVRDSAAELLDIYARRAA
REGHAFRLATQDYEAFADEFGFEETADQRAAIEAVIQDMVSPRPMDRLVCGDVGFGKTEV
ALRAAFVAVSGGRQVAFLAPTTLLAEQHYQTLLDRFGPWPVKVAEVSRFRSGKEVAASLA
GIGDGTVDIVVGTHKLLSGAIRFHDLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTAT
PIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHN
EVETIEHRRQRLEEILPEARIAVAHGQMPERALERVMRDFVAQRYNLLLCSTIIETGIDV
PTANTILMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTRQAAQRLDAIQQME
ELGSGFYLALHDLEIRGAGQVLGENQSGNMLEVGFQLYNEMLAEAVKALRAGKEPDLLGP
LSATTDINLHAPALLPEHYCGDVQLRLSFYKKLASAKTPEQIDGLLEELVDRFGKLPPQA
QTLIDVHRLRVLSRPYGVVKVDAAPGVIHITFRPQPPVDSLRIIELIRKNAHIKLVGNEK
LRIERATAQPAERARLVREVLRQFGAPLAEVAPP
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgctccgcgtcccggggggtgcggcgagttcgacaccagcgtctgcatggaactg
cccacactctcccccggaaaacgattcaccctggcccgccctgcgggcagcgccgattcc
ctgctgctggcccgcctggccgaacgcgaacgcgccgccgggcgcgccacggccatcgtg
gtggccgacgccagcgacgcgcagcgcctgatcgacgagttcgcgttttttgccccggcc
ctgcgctgcgcgctgtttcccgactgggaaacgctgccctatgacagtttctcgccgcac
caggacctgatcagcgagcggctggcgacgctgtggcgcatccggcagggccaggccgat
gtggtgctggtgccggccaccacggcgctgtaccggctggcgccgccggcgtttctggcc
ggctatacctttcactttgcgctcgggcaaaagctcgatgcggcccaattcaaggcccag
ctcacgctggccggctacagccatgtatcgcaggtggtcagccccggcgagtacgcagtg
cgcggcgggctgatcgacctgttcccgatgggcgcgagcgtgccgtaccgggtggacctg
ttcgacgacgagatcgactcgatccgcagcttcgaccccgacaaccagcgcagcctgcac
ccggtgcccgaagtgcgcctgctgcccgggcgcgagtttccgatggacgaggccgcgcgc
gccaagttcagaagccgctggcgcgaactgatcgagggcgacccgaccaagagccgcatc
tacaaggacatgggcaacggcgtggccacggccggtatcgagtattacctgccgttgttc
tttgacgacaccgccagcatgttcgactacctgggcagcgccgccatcgtggtgctgcat
ggcgacctggagccggttttccagcgcttctggcaagacaccaaagagcgctttcgcctg
accagcgccgaccctgaacgccccgcgctgccgcccgaggcgctgtttttgtcgatcgag
cagttctacacccgggccaatgcgtatgcgcagttgtcgctgcgcccgggcgcgccggag
caggccggggacggggctttttgccgcttgggcgatttgtccgtgctgcgcgccgccgat
gacccgctggcccgcttgcaggcccatatccgcagcacgccgcgccgcgtgctgctgctg
gccgaaagcgctggccggcgcgagagcctgctcgattttctgcgcgccgcgcagatcgac
ccgccggtgttcgactcgctggccgcgttccagggcgccgccggcgcgccgctgggcatt
gccacggcagcgctgagcgtgggctttggcgccatcgccgagggcatcgatttcgtcacc
gaaaccgagctgttcgccgccggcccgagcacgcgccggcgcaaaaagcaagagcaggtc
agcgatgtcgaggcgctgatcaaagacctggcggaactgaaccttggcgacccggtggtg
cacagcgcgcatggcattggccgctaccgggggctggtccatatggacctgggccagccg
aaccccgacggcacaccggcgctgcaggagttcttgcacctggaatacgccgaccaggcc
gtgctgtacgtgcccgtgagccagttgcagcagatcagccgctacaccggcgtaggcgcc
gacgaggccccgctgcacaagctcggcagcggccagtgggaaaaggccaggcgcaaggcc
gccgagcaggtgcgcgacagcgccgccgaactgctcgacatctacgcgcgccgtgccgcg
cgcgagggccatgcgtttcgcctggcaacgcaggactacgaggcttttgccgacgaattc
ggtttcgaggaaaccgccgaccagcgcgccgcgatcgaggccgtgatccaggacatggtc
tcgccgcgcccgatggaccgcctggtctgcggcgatgtcggcttcggcaaaaccgaggtg
gcgctgcgcgcggccttcgtggcggtcagcggcggccggcaggtggcgttcctggcgccg
accacgctgctggccgagcagcattaccagaccctgctcgaccgctttggcccatggccg
gtgaaggtggccgaggtctcgcgctttcgctcgggcaaggaggtcgcggccagcctggcg
ggcattggcgacggcacggtggacatcgtggtcggcacgcacaagctgctgtccggcgcg
atccggttccacgacctgggcctgttgatcatcgacgaggagcaccgctttggcgtgcgc
cacaaggagcagatgaagcagttgcgcgccgaggtcgacgtgctcaccctcaccgccacg
ccgatcccgcgcacgctgggcatggcgctcgaaggactgcgcgacctgagcgtgatcgcc
accgcgccgcagcggcgcctggccatcaagaccttcgtgcgcaacgaaggcacgggcgtg
atccgcgaggccgtgctgcgcgagctcaagcgcggcgggcaggtgtacttcctgcacaac
gaggtcgagaccatagaacaccggcgccaaaggctcgaagaaatactgcccgaggcgcgc
atcgccgtggcccatggccagatgcccgagcgcgcgctcgagcgcgtgatgcgcgacttc
gtggcccagcgctacaacctgctgctgtgctcgaccatcatcgagaccggcatcgatgtg
cccacggccaacaccatcctgatgagccgggccgacaagttcggcctggcgcagttgcac
cagttgcgcgggcgcgtgggccgcagccaccaccaggcctacgcctacctgatggtgccc
gacaccgagggcctgaccaggcaggcggcccagcggctcgacgcgatacagcagatggag
gaattgggcagcggcttttacctggcgctgcacgacctggagatccgtggcgcgggccag
gtgctgggcgaaaaccagagcggcaacatgctggaggtgggctttcagttgtacaacgaa
atgctggccgaagccgtcaaggcgctgcgggccggcaaggagcccgacctgctcggcccg
ttgagcgcgaccaccgacatcaacctgcacgccccggcattgctgcccgagcactactgc
ggcgacgtgcaactgcgcctgtcgttctacaagaaactggccagcgcgaagacgcccgag
cagatcgacggcctgctcgaagaactcgtcgaccgcttcggcaaactgccgccgcaggcg
caaacgctgatcgacgtgcaccgcctgcgcgtgctcagccggccctatggcgtggtgaag
gtggatgcggcgccgggcgtgatccacatcaccttccgcccccagcccccggtggacagc
ctgcgcatcatcgaactgatccgcaagaacgcgcacatcaaactggtgggcaacgaaaag
ctgcgcatcgagcgcgccaccgcgcagcccgcagaacgcgcccggctggtgcgcgaggtg
ctgcgccagttcggcgcgccgctcgccgaggtcgcgccgccgtga
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