Verminephrobacter eiseniae: Veis_4757
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Entry
Veis_4757 CDS
T00460
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vei
Verminephrobacter eiseniae
Pathway
vei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Veis_4757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vei03019
]
Veis_4757
Enzymes [BR:
vei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Veis_4757
Messenger RNA biogenesis [BR:
vei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Veis_4757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ABM60451
UniProt:
A1WS44
LinkDB
All DBs
Position
complement(5249310..5251055)
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AA seq
581 aa
AA seq
DB search
MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPIL
HRLSQNPAAKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQ
IERLQRGVDILVATPGRLLDLQQQGFVDLASVQVLVLDEADRMLDMGFIQDVKKVLALVP
GDKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNSTVQRIAQVIHPVGRGKKKQVLRH
IIEQHDWSQVLVFTRTKFGANSVAEFLTKNGVNAMALHGNKSQSARTQALADFKNGDIRA
LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGATGQAVSLVCMDEEGFMM
DIERFTQQQIPVQPIEGFGPEPGEKAEPIAMGRQTLWGGAGKPPSREVMQAAARAARSEM
LARIRTNQAGQGNGQSERGPRQPYGGRNGGPGGAGNRGPGGARNGSGEPAGPRGAPARSR
GPRPESVRGPRPEGGAYRNDDAQPPRPNAHLGTHGGHGNLGQRNGGNGGGQPDPMRTSVD
SMAERGRRGGAGYRKPEGGGYGAGRGPGQRGPGGSRGPFNR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgatgaactgaacctggctcctgccatcctgaaagccgtgcatgaaaccggc
tacgaaacccccaccccgattcaggcccaagccatccctgcggtgcttgccggccatgac
ctgctggccggcgcgcagaccggcaccggcaagaccgccgcgttcacgctgccgatactg
caccgcctgtcgcaaaacccggccgcaaagaacaaattcggcggcaagggcatccgcgct
ctggtgctgacccccacccgcgaactggccgcccaggtggaagagtcggtgcgcgaatac
ggcaagtacctcgccatcgactcgaccgtggtgttcggcggcgtcggcatggccccccag
atcgagcgcttgcagcgcggcgtggacatcctggtggccacccccggccgcctgctggac
ttgcagcagcagggcttcgtcgacctggccagcgtgcaggtgctggtgctcgatgaagcc
gaccgcatgctcgacatgggcttcatccaggacgtgaagaaggtgctggccctggtgcct
ggcgacaagcaaagcctgctgttctcggccaccttcagcgacgacatccgcgagctggcc
aacagcctgctcaagaacccgcaaagcatacaggtcacgccgcgcaacagcaccgtgcag
cgcatcgcgcaggtcatccacccggtgggccggggcaagaaaaagcaggtgctgcggcac
atcatcgagcagcatgactggagccaggtgctggtgttcacccgcaccaagttcggcgcc
aacagcgtggccgagttcctgaccaagaacggcgtcaacgccatggccctgcacggcaac
aagagccagagcgcccgcacccaggccctggccgatttcaagaacggcgacatccgcgcc
ctggtggccaccgacattgccgcgcgcggcatcgacatcgacgaactgccgcatgtcgtc
aactacgaaatccccaacgtcccggaagactacgtgcaccgcatcggccgcaccggccgc
gccggcgccaccggccaggccgtgagcctggtctgcatggacgaagaaggcttcatgatg
gacatcgagcgctttacccagcaacaaattccggtgcagcccatcgaaggcttcggcccc
gagccgggcgaaaaggccgaaccgatcgcaatgggccgccagaccctctggggcggcgca
ggcaagccccccagccgggaagtgatgcaggccgccgccagggccgcccgcagcgaaatg
ctggcgcgcatccgcaccaaccaggccggccaagggaacggccagagcgaacgcggcccg
cgccagccctatggcggccgcaacggcggcccgggcggggccggcaacagggggccgggc
ggagcacgcaatggcagtggcgagccggccggaccccggggggcaccggcccgcagtcgc
ggcccgcgcccggaatctgtccgtggcccgcgtccggaaggcggcgcttaccgcaacgac
gacgcccaacccccgcgccccaacgcccacctgggcacgcacggcggccacggcaacctg
ggtcagcgcaatggcggcaatggcggcggccagcccgacccgatgcgtaccagcgtggac
agcatggcagagcgcggccgccggggtggcgccggctatcgcaaacccgagggcggcggc
tatggcgctggccggggccccggccagcgcgggccaggcggttcgcgcggccctttcaac
cgctga
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