Vibrio sp. EJY3: VEJY3_01815
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Entry
VEJY3_01815 CDS
T01683
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vej
Vibrio sp. EJY3
Pathway
vej02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VEJY3_01815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vej03021
]
VEJY3_01815
Transcription machinery [BR:
vej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VEJY3_01815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF8723
Motif
Other DBs
NCBI-ProteinID:
AEX20861
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Position
1:complement(396351..398222)
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AA seq
623 aa
AA seq
DB search
MDQNPQSQLKSLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALNDDTNITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQSSVAEYPGTIPYILEQFDKVQAEELRLTDLISGFVDPDAEDTAAPTA
THIGSELSESQLEDEDDTDVDDDDEDEDGDDDSEDTEEDVGIDPELALEKFNQLRSTYQN
LQLAINEYGYESPKATVANEMMLDVFKEFRLTPKQFDHLVNELRTSMDRVRTQERLIMKS
VVEYGKMPKKSFIALFTGNESSDAWLDEILASDKPYAEKIKRNEEEIRRSITKLKMIEEE
TSLSVQNVKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM
LQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL
PLDSATATSLKGATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSETLRSFLDE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaagtcacttgttattaaaggcaaggaacaaggc
tatctgacctacgccgaagtaaatgaccacctacctgctgaaatcgtagattcagaacag
gtagaagacatcattcagatgatcaatgacatgggcattaaggtagtagaaactgctcct
gatgctgatgatttagcactaaatgatgacacaaatattaccgatgaagatgcagccgaa
gctgcagccgctgcactttctagcgtagaaagtgaaattggtcgtactacagacccagtg
cgtatgtacatgcgtgaaatgggtacagtagaactactgactcgcgaaggcgaaatcgac
atcgcaaaacgtattgaagaaggtattaaccaagttcaatcatctgttgctgaataccca
ggaacgatcccgtacattcttgaacagtttgataaagttcaagcagaagagcttcgcctt
acggatctaatttctggatttgtagaccctgacgcagaagatactgctgcacctacagca
acacacatcggttctgagctatctgaatctcaattagaagatgaagatgacacagacgtt
gatgatgacgacgaagacgaagatggcgacgacgattcagaagacactgaagaagatgtt
ggtatcgatccagaacttgctctggagaagtttaatcagctacgtagtacataccaaaat
ctgcagttagcgatcaacgaatacggctacgaaagcccgaaagcaaccgttgctaatgaa
atgatgctagacgtgttcaaagaattccgtctaacaccaaaacagttcgatcacttggtg
aatgagctgcgtacgtctatggatcgcgttcgtactcaagaacgcttgatcatgaagtca
gtcgttgaatacggcaaaatgccgaagaaatcattcatcgctctgttcactggtaacgaa
tcaagtgatgcttggttagatgagattctagcgtctgacaaaccatacgcagagaaaatc
aaacgtaacgaagaagagatccgtcgttcaatcactaagctaaaaatgattgaagaagag
acgtctctgagcgtacaaaacgttaaagacatcagccgtcgtatgtctatcggtgaagca
aaagctcgccgtgctaagaaagagatggttgaagcgaacttacgtctggtaatttctatc
gcgaagaaatacaccaaccgtggtctacagttcttggatctaatccaagaaggtaacatc
ggcttgatgaaagcggtagacaagttcgaatatcgtcgtggttacaagttctcgacatac
gcaacgtggtggatccgtcaggctatcactcgttcaatcgcagaccaagctcgtacgatt
cgtattccggtacacatgatcgaaacgatcaacaaactaaaccgtatctctcgtcaaatg
ctacaagagatgggtcgtgagccactaccggaagaacttgctgaacgcatgcagatgcca
gaagacaagattcgtaaagttctgaaaatcgctaaagagccaatttcaatggagacacca
atcggtgacgacgaagattcgcatctaggtgatttcatcgaagatacgacgcttgaacta
ccattggattctgcaacagcgacaagcttgaaaggcgcgacaaaagacgtgcttgcaggt
ctaacgccacgtgaagcaaaagtacttcgtatgcgttttggtatcgacatgaacaccgac
cacactctagaagaggttggtaaacagttcgacgttactcgtgaacgtattcgtcagatc
gaagcaaaagcactacgtaaacttcgtcacccaagccgctcagaaacactgcgcagcttc
ctggacgagtaa
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