Vibrio sp. EJY3: VEJY3_02280
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Entry
VEJY3_02280 CDS
T01683
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vej
Vibrio sp. EJY3
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vej03009
]
VEJY3_02280
Enzymes [BR:
vej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VEJY3_02280
Ribosome biogenesis [BR:
vej03009
]
Prokaryotic type
rRNA helicases
VEJY3_02280
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_11
AAA_22
AAA_30
Utp25_C
AtuA_ferredoxin
Motif
Other DBs
NCBI-ProteinID:
AEX20954
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Position
1:complement(509152..510375)
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AA seq
407 aa
AA seq
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MIRTFAELDLDSNLLDAIEEMGFERPTKVQAEAIPQALDGRDILASAPTGTGKTAAFVLP
ALQYLQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHAD
ILATTQDIVVATPGRLREYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWR
KQTLLFSATLEGRGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLALLKH
IITEQAERTIVFLKTRERLAELRSQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVL
LATDVAARGIDLPDVSHVINYDLPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR
VARYVKEDIKERFIKEMRPKHKKPVFKKKKKKDDKKKTAKKKVAKKK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgatcagaacctttgctgaacttgatctagactcaaacttacttgatgccattgaagaa
atgggcttcgaacgcccaacaaaagtccaggcagaagcaatcccacaagcgttggatggt
cgtgacattctagcgtcagcaccgactggcacaggtaaaacagcagcattcgtattgcct
gctctacaatacctacaggattttccacgtcgtaaacctggacctgcgcgtatccttatc
ctaaccccaacgcgtgagttggcgatgcaggttgcggatcaagcccgtgcactggcgaaa
aatactaagctcaatatttttaccatcaccggtggcgttcagtaccaagagcacgctgac
attcttgctaccacgcaagacatcgttgttgcgacaccaggtcgtctgcgcgaatacatt
gaagctgaacgctttgattgtcgtgcgattgaatggttaatcctagacgaagccgaccgc
atgctagacatgggctttgcgccaacagtcgatcgtctatcgaacgagtgtcgctggcgt
aagcaaacccttctgttttctgcaacattagaaggcagaggcgttgaaggctttactgcg
gacctgctgaatgaacctgcagagatcgatgcgaagtcaccgctacgcgaacgcaagaag
atcgcacagtggtatcaccgagcggacgacgcagagcataaactcgcgctactcaagcac
atcatcacggagcaagcagaacgtactatcgtgttcctgaaaacgcgtgaacgtctggct
gaactgcgtagccagcttgaaagcgcacagattccatgttcatggattcaaggtgaaatg
ccacaagatcgccgtaataacgcgattgcacgtttccgtgatggtacggttaacgttcta
ctcgcaacagacgttgcggctcgtggtatcgaccttcctgatgtgtcacacgtgatcaac
tacgacttgccacgtacagcagatgtttacctgcaccgaattggccgtaccgctcgtgct
ggtaaaaaaggtaacgctatctcaattgtagaagcgcacgaccagccaatgatggatcgc
gttgctcgttacgtgaaagaagacatcaaagagcgtttcatcaaagagatgcgtccaaaa
cacaaaaaacctgtgtttaagaagaaaaagaaaaaagacgataagaagaaaactgcgaaa
aagaaagtcgctaaaaagaagtaa
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