Vibrio sp. EJY3: VEJY3_02325
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Entry
VEJY3_02325 CDS
T01683
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vej
Vibrio sp. EJY3
Pathway
vej05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VEJY3_02325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vej03000
]
VEJY3_02325
Transcription factors [BR:
vej03000
]
Prokaryotic type
Helix-turn-helix
Other families
VEJY3_02325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_16
AAA_2
AAA_22
AAA_5
HTH_29
AAA
HTH_50
HTH_7
HTH_22
HTH_17
TIP49
HTH_Tnp_1_2
HTH_IclR
LacI
HTH_30
DUF134
TrmB
RWP-RK
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AEX20963
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All DBs
Position
1:520229..521563
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AA seq
444 aa
AA seq
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MAGQFKMDSIPGSLVVVGGTYEPWLSVLEQVGWKCHQVGDLRKANALLEDIGPCIGIVDL
SHDEFSLNGLANLVSSHKHVRWLAFIRESQLGADTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPSFGNSLDMGLLGESIPMKRLRDQVKRIGPTDVSILISGESGTGK
EAVARAIHKVSSRSHKPFMSINCRALNEQRFQAEVFGMAANSSIGPSLLEQADGGTVLFN
DVLTISKQQQMNLLRFLQEGTVETADGVKSVNVRILAANSSDVEKALINGDFNEELYHYI
NVLRISVPSLKERASDIALLARFYLQEFSKEYNSQAKSFSEDALKALTRYYWPGNVRELM
NQVKRAVLMSDSVVIDEHHLDLPQRNDSKRSLKSIREKSERDALLVVLESHSGQVSNAAK
ELGVSRATMYRLLNKHNLISDQTI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcagtttaagatggattccattccggggtcgcttgtcgtcgtcggcggcacg
tatgagccttggttatcagtattagagcaagttggctggaagtgtcaccaggtaggtgat
ttacgtaaagctaatgcgttgttggaagatattggtccctgtattggtatcgtagacctt
agccatgatgagttcagcttaaacggtttggctaatttggtgagctctcataagcacgtg
cgttggctggcattcatcagagagtcgcagctgggtgctgatacgatctgccagtttatc
gtcaacttttgtatcgacttcttcactgctccaattcctgacgcgcaactactaagcacc
atcggtcaccagcttggtatgctgaaattagaaaagaaagtgtggccaagttttggtaac
agtcttgatatgggcctgttgggagaatcaatcccaatgaaacgattgagagatcaggtg
aagcgtatcggtccaacagacgtcagtatccttatttctggagaaagcggtaccggaaaa
gaagcggtcgcccgagcgattcataaggtctcttcccgttctcacaaaccgtttatgtcg
attaattgcagagctttgaacgagcaaagattccaagcggaagtgtttggtatggcagcg
aacagttcaataggtccaagcttactggaacaggctgatggtggtaccgttctttttaat
gacgtgcttaccatctctaagcaacaacaaatgaatttgttgaggtttttgcaagaaggc
actgtcgaaaccgctgacggtgtgaaaagtgttaacgttcgtattcttgcggcgaactca
tctgatgtagagaaagcgctgattaacggtgacttcaacgaagagctttatcactacatt
aacgtgttgcgaattagtgttcctagccttaaagagcgtgccagcgacattgcgttattg
gcgcgtttctacttgcaagagttttcaaaagagtacaactctcaagcgaaaagcttctca
gaagatgccctaaaagctctgacgcgttactactggcctggcaatgtgcgcgagctaatg
aatcaagtcaaacgtgcagtattaatgtctgacagcgttgtgatagatgagcatcattta
gatctgcctcaacgcaatgactccaaacgaagcctgaaatcgattcgcgaaaagagcgaa
cgtgatgcattgcttgtggttttggagtcgcactcaggccaagtgtcgaatgctgctaaa
gagctgggcgtttcacgtgcaaccatgtaccgccttctcaacaagcataatttaatttca
gaccaaactatctaa
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