Vibrio sp. EJY3: VEJY3_03970
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Entry
VEJY3_03970 CDS
T01683
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vej
Vibrio sp. EJY3
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vej03016
]
VEJY3_03970
Enzymes [BR:
vej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VEJY3_03970
Transfer RNA biogenesis [BR:
vej03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VEJY3_03970
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEX21292
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All DBs
Position
1:896112..897278
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AA seq
388 aa
AA seq
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MIECQRFAGIFYSEKHVNYKIIIKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLI
QLFDGNNLSLIDPTELTDMSPFVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQ
LMAAFLGHGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYE
ILLDKVTEAGWWHAVQQESDLLVSKRIREVNEENAYLDIKGAWQLKPAELAVLKPLATWR
YRQAIKRDLALNFVFKEGDLLTVARLGLTSFKKMEAEGIDIRAVNRHGAKIADIVKKAKQ
TPADEYPEKIERLMDYPGYKQVFKNMKDIVKSASQKSGLATEFLASKKQINQLLSWVWKK
DRDPARMPDVMQNWRLELIGEKMNKALK
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatgccagcgttttgctggcattttttatagcgagaagcatgtgaattataag
attattattaaaaacaaagacctagaacaagtttgcgctcaagccagagacgcagatgtc
gttatgttggatacggaatttgtacggatcagaactttctatccacagctaggtttgatt
cagcttttcgacggcaataatctttccttaatcgatccgacagaactgacggacatgtca
ccgtttgttgaacttttgaaagatacctcggtattaaaagttctgcatgcatgtggtgaa
gatctcgaagtgttccagaatgcgtttggttgcacgccatttccgatggtcgatacccag
cttatggcagcgtttcttgggcatgggctatcaacaggctttgcaacgctagtggaagaa
tatctgggtgttgaactggataagagcgagtctcgcacagactggatggctcgcccgctg
acgcaaaagcagcttgattatgctgcggctgacgtacactacttgctgccgctttacgaa
attttgctcgataaagtcaccgaagctggctggtggcatgcggtgcagcaggagagcgat
ttactggtttcgaagcgtattcgtgaagtgaacgaagaaaatgcgtaccttgatatcaaa
ggtgcatggcaacttaaaccggcagagttggctgtcttaaaaccgctggccacttggcgt
taccgtcaggcaatcaaacgtgacctcgctctgaactttgttttcaaagagggggactta
ttaacggttgcccgccttggtttaacaagctttaagaaaatggaagcggaaggcattgat
atccgagccgttaaccgtcacggtgcaaagattgctgatatcgttaaaaaagccaagcag
acacctgcggatgaataccctgagaaaattgaacgtcttatggactacccaggctataag
caggtcttcaagaacatgaaagatattgtgaaaagtgcatcacagaaatctggcttagcg
actgagttccttgcctctaaaaagcagatcaatcagttgcttagctgggtatggaaaaag
gaccgtgatccggcaagaatgcctgatgtgatgcaaaactggcgtcttgaacttatcggc
gaaaaaatgaataaagcgcttaagtag
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