Vibrio sp. EJY3: VEJY3_04750
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Entry
VEJY3_04750 CDS
T01683
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vej
Vibrio sp. EJY3
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vej03032
]
VEJY3_04750
03400 DNA repair and recombination proteins [BR:
vej03400
]
VEJY3_04750
Enzymes [BR:
vej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VEJY3_04750
DNA replication proteins [BR:
vej03032
]
Prokaryotic type
DNA Topoisomerases
VEJY3_04750
DNA repair and recombination proteins [BR:
vej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VEJY3_04750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AEX21446
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Position
1:1080249..1082876
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AA seq
875 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGEKAAAISTKGMSAEE
KARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVSELQKLAKDADYVYLATDLDR
EGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKADF
KLLVAQKDGVAFKPVNEAETKAAMSVLEKASYEVCKREDRPTKSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPASPLK
YGSKEGAQEAHEAIRPSSVDVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTIS
VKAEEFTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLNLESLDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSFN
DLMNYDFTARMEQKLDQIAEGEVNWKSVLDNFFTDFTGDLEKADLDESEGGMKLNHIVMT
DIECPTCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYIVEYGEFKVKGYDGPVVECDKCGS
DMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVSELALYEERLPEKFKYLATAPQEDPDGRPAVVRFSRKTK
ENYVRSEENGKPSGWTALYVDGKWEVTDKRKKAKA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtcaccagccaaggcaaagacaataaataagtac
cttggtaaagactttgttgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggccaaagcactggtgagaaagcagctgccatttcaactaaagggatgagtgctgaagag
aaagcacgagtcaaaaaagagaaagatcgtaaagcgctgatcaaaaaaatggggatcaac
ccatatcacgactgggaagcgaattatcagattcttcctggcaaagaaaaagtagttagc
gaattacaaaaattagccaaagatgctgattacgtctatctcgcaaccgatttggaccgc
gagggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcgatac
aaacgagttgtttttaacgaaattacgaaaaatgctatccagcaagctttccagacgcct
ggtgagctaaatatggatggcgtaaacgcgcagcaagcccgtcgattcatggaccgcgtg
gttggcttcatggtctctccattactatggaagaaagttgctcgtggcttgtctgcaggc
cgtgttcagtcggttgcggttaagttgctggtagagcgtgagcgcgaaatcaacgcattt
gtgccggaagaattctgggacatccacgcaaacaccaagaccaaagacaaagcggatttc
aaactgctggttgctcagaaagacggcgtagcgtttaagccagttaatgaggcagaaacc
aaagcagcgatgtctgtgctggaaaaagctagctacgaagtttgcaagcgtgaagaccga
ccaacgaaaagtaagccgtcagcgccttacatcacttcgactctgcagcaagcggcaagt
acccgtttaggctacggcgttaagaagaccatgatgctggctcaacgcttgtatgaggcg
ggttacatcacctatatgcgtactgactcaactaacttgagtgcagaagctgtggatgct
gtccgtgacttcatcggttctgagtttggtgacaagtaccttccagcttcaccgttaaaa
tacggcagcaaagaaggggctcaagaagcgcacgaagcgattcgaccgtctagcgtggat
gtgaaagcagaagatctgcaaggtgtcgacgcagacgctcataagctttacgcattaatt
tggaaccagttcgttgcgtgtcaaatgacgccagcagaatacgattccacaaccatcagc
gtcaaagctgaagagttcacattaaaagccaaaggtcgcatcctgaagtttgacggttgg
actcgcgtacaacgtccaatgggcaaaaacgaagatacaatccttcctgcggtgcagctt
ggcgataagctgaacctagagtcacttgacccgaaacagcactttaccaagccgccagca
cgctttacagaagccgcactggttaaagaacttgaaaagcgtggtattggccgtccatcg
acttacgcgtctatcatctcgacgattcaggatcgtggctacgtgaaagtcgaccagcgt
cgtttctacgcagagaaaatgggtgagatcgttacagaccgtctggacgatagctttaat
gatttgatgaactacgactttaccgcgcgtatggaacaaaagctggaccaaatcgcagaa
ggtgaagtcaactggaaatcagtactggacaacttctttaccgacttcaccggtgacctt
gaaaaagccgacttggatgagtctgaaggtggtatgaagcttaaccacattgtgatgaca
gacatcgaatgtccgacatgtggccgcccaatgggtattcgtacagcatccaccggcgta
ttcctgggttgttctggttatgcactgccacctaaagagcgttgcaaaaccaccatcaac
ttaggcgatgaagaaggcatcatcaacgtcttagaagaagacgtagaaaccgcagcgcta
cgtgccaagaaacgttgtccaatctgtgaaacagcgatggacgcgtacctaatcgacgat
aaacgtaagatgcacgtttgtggtaacaacccaaactgtgaaggttacatcgttgaatac
ggtgagtttaaagtgaaaggctatgatggaccggttgttgagtgtgacaagtgtggttct
gacatggtgcttaagaatggtcgcttcggtaaatacatggattgcacaagcgagacatgt
aaaaacacccgtaagattctgaagaacggtgaagttgcgccgccgaaagaagatccagtg
catttccctgaactgccatgtgaaaactcggatgcttactttgtgttgcgtgatggggca
tctggcctgtttatggcagccagcaacttccctaaatcacgcgaaacgcgagcgccactt
gtttcagagcttgcgctttacgaagaacgcttaccagagaagttcaaatatctcgcgaca
gcaccacaggaagaccctgatggtcgtccggcagtggttcgttttagccgtaaaactaaa
gagaactacgttcgctctgaagagaacggcaagccaagcggttggactgcactttatgtt
gatggtaaatgggaagtcaccgacaagcgtaaaaaagccaaagcttaa
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