Vibrio sp. EJY3: VEJY3_12000
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Entry
VEJY3_12000 CDS
T01683
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vej
Vibrio sp. EJY3
Pathway
vej03030
DNA replication
vej03430
Mismatch repair
vej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VEJY3_12000 (dnaE)
03430 Mismatch repair
VEJY3_12000 (dnaE)
03440 Homologous recombination
VEJY3_12000 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vej03032
]
VEJY3_12000 (dnaE)
03400 DNA repair and recombination proteins [BR:
vej03400
]
VEJY3_12000 (dnaE)
Enzymes [BR:
vej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VEJY3_12000 (dnaE)
DNA replication proteins [BR:
vej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VEJY3_12000 (dnaE)
DNA repair and recombination proteins [BR:
vej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VEJY3_12000 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AEX22876
LinkDB
All DBs
Position
1:complement(2668290..2671769)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDFSMVDGISKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGC
GVKPIIGADFKMQSDEFGEELTQLTVLAADNVGYKNLTLLISKAYLRGHIQHQPVIDKSW
LAEMSEGLIVLSGGKNGDIGKALLKGNRNLVQSCVEFYKQHFPDRYYLELLRTGRPDEET
YLHFAVELAEQVDLPVVATNEVVFLSSDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYL
RSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMKETEFLVMKSREGL
EERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDPGMTLDKAFKAEPA
LPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDQASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYTQVPPWPEKVWLEGERETLGLY
LTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSVSIDANQINDQFFEQFSRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LIDDLKQLLGTNQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcccaagttcattcaccttcgagttcacagtgatttttcgatggtggatggt
atcagcaaagttccaccgatagttaagaaagtcgccgagcttggcatgcctgcaatggca
ttgaccgatttcactaacctgtgtggtttggtgaagttttacggcacagcacatggctgc
ggtgtaaaaccgatcatcggtgcagatttcaaaatgcaatctgatgagttcggcgaggag
ctgacacagctaacagtactggcagccgataatgtcggttacaaaaacctgacgctgctt
atctccaaagcgtatttacgtggtcatatccagcatcagccagtgattgataagtcttgg
ttagccgagatgtcagaagggttaatcgtcctttctggcggtaaaaatggtgatatcggc
aaagcgttgctcaaaggtaaccgtaacttagtccagagctgtgtagaattttacaaacag
cactttccagatcgttattacctagaattactccgtactggccgtccggatgaagaaacc
tacttgcacttcgccgttgaactggcagagcaagtggatctgcctgttgttgcaacaaac
gaagtggtcttccttagttctgatttgtttgatgcccatgagattcgcgtagcgatccat
gatggctacacattagaagatcctcgcagaccaaaaaattacagcccacagcaatacctc
cgcagtgaggaggaaatgtgtgagctgtttgcggatattcctgaagcactggaaaacagt
gttgagatagccaagcgttgtaacgtcaccgttcgtttgggtgagtacttcctgcctgcg
ttcccaactgagggaatgaaagagactgaattcttggtaatgaagtctcgcgaaggtctg
gaagagcgtctggagttcctgtttccggatgaagaagaacgcaaaaagcgtcgtcctgaa
tacgatgaacgtttgcaaatcgagctggatgttatcaaccagatgggcttcccgggatac
ttcctgatcgtaatggagttcatccagtggtcgaaagacaatgatattcctgtaggtcca
gggcgtggttcgggtgcgggctctctggtggcatacgcactgaaaatcacagaccttgac
ccactagaatatgatcttctcttcgaacgtttcttgaacccagaacgtgtatccatgccc
gatttcgatgtcgacttctgtatggataaacgagaccaggtgattgatcacgtagcagaa
atgtacggtcgcgatgcggtatctcagatcattacctttggtacgatggctgccaaagcg
gtaattcgtgatgtgggccgtgtcctcggtcatccgtttggttttgtcgaccgaatctcg
aagcttatcccgccagatccgggtatgacgctggataaagcattcaaagccgagccagca
cttcctgagctctatgaggcagatgaagaagttaaagaactcatcgacatgtgccacatc
ttggaaggttgtacgcgaaacgcaggtaagcacgcgggtggtgttgttatttcaccaacc
acgattacggacttcgcgccaatttatgcggattcagaaggtcatttcccggtaacacag
tttgataagaacgacgttgaaactgcgggtttggttaagtttgacttccttggtcttcgt
acactgaccattattgactgggcgcttgggttgattaacccgcgtttagagcgtgaaggt
aaagcgccggttcgtatagaatctatcccgctcgatgatcaggcgtcgttccgcttgtta
caaaactcagaaaccaccgccgtattccagttggaatcgcgtgggatgaaagagcttatc
aagcgacttcagccagactgttttgaagacattatcgcactggtggcacttttccgtccg
ggtccattgcaatcaggcatggtagataactttattgaccgtaaacacggtcgggaagcg
atctcttaccctgatgaaaagtggcaacacgagtcattaaaagaaattctcgatccgact
tacggcattatcctgtatcaggaacaggtaatgcagatcgcgcaggtactgtctggctac
acgcttggtggcgcggacatgcttcgtcgtgcgatgggtaagaagaagccggaagagatg
gccaagcagcgtgctaccttcgaggaaggcgcggtgaagaatggcgtcgacggcgagttg
gcgatgaaaatcttcgacttggtagaaaagttcgctggctacggctttaacaaatcgcac
tctgccgcatacgcattggtttcttaccaaacgttgtggctaaaaatgcattatccagca
gagtttatggctgcggtaatgacagccgatatggacaacactgagaaagtggttggtctg
gtcgacgaatgtttccgtatgaagcttaccgtattgccaccggacattaactcagggttg
tatcgctttaatgttgatgaaaacggcgctattgtttacggtatcggtgcaattaaaggc
gtgggtgaaggtccaattgatgcgattttggaagcgagaaacaaaggtggtcactttaaa
gacctgtttgatttctgtgctcgaatcgatctgaaacgtgttaacaaacgtgtcattgaa
aaattgatttatgcaggtgccttagacagacttggtccacatcgtgctgcgatgatggca
tcactcaatgatgctgttaaagccgcaagccaacaccatcaggcagaggcatttggtcag
gcggatatgtttggtgtactgactgatgcacctgaagaagtggagcacaaatatacccag
gttccgccttggccggaaaaagtttggctagaaggtgaacgcgaaactctcggtctatat
ttgactgggcaccccattaacgcgtatttgaaggaactaaataaatacaccagttgtcga
ctaaaagacgcgacaccaacacgtcgtgatcaatcagtgacggtagctggtttagtcata
gccgctcgtgtgatgacaaccaagcgtggaacacgtattggtatcatgacattggatgac
cgaagtggtcgaatggaggtaatgctattctccgatgcgcttgatcggtatgctgaactt
ctcgaaaaagacagaattttggtcgtttcaggacaggtcagctttgatgacttcaatggt
ggccttaaaatgtcggcgcgtgaagttatggatctcggcagcgcgcgtgaaaaatacgct
cgtggtctgtcggtatcgattgatgcaaatcagatcaatgatcaattctttgagcagttc
agtcgtattttagaaccgcacaaagccggaaccgtacccgtcaatgtatactaccagcgt
gccgacgccagagcgcggttaacattgggcaccgagtggcgagtaacgccaagtgataca
ttaatagacgatttaaaacagttacttggaacaaaccaggtagaacttgaatttaactaa
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