Vibrio sp. EJY3: VEJY3_12185
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Entry
VEJY3_12185 CDS
T01683
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vej
Vibrio sp. EJY3
Pathway
vej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEJY3_12185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vej03019
]
VEJY3_12185
03400 DNA repair and recombination proteins [BR:
vej03400
]
VEJY3_12185
Enzymes [BR:
vej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VEJY3_12185
Messenger RNA biogenesis [BR:
vej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEJY3_12185
DNA repair and recombination proteins [BR:
vej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VEJY3_12185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
DDE_3
AAA_22
Enoyl_reductase
Motif
Other DBs
NCBI-ProteinID:
AEX22913
LinkDB
All DBs
Position
1:2704835..2706760
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AA seq
641 aa
AA seq
DB search
MQSIPLQQTLQSVFGFDSLRSGQQPVIEAVMSGNSAAAIFPTGSGKSLCYQLPATQLPNL
TLVISPLLALMKDQLSFLQSRGIAAASIDSSQSREESQKVMAGVKNGQIKILMISVERLK
NERFREFIRQIPISLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNISQSLLLTATATPA
VIDDMQQKFNIASEHITVTGFYRPNLDISVVPSQESEKQTQLNTIVAAQPTLPTIVYVTQ
QQTAEQVAKSLIHIGINAHAYHAGMKSDVREKIQQQFMDSQIDCIVATIAFGMGVDKSDI
RRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPERTSISYV
LEQAREHTPQWEVVPLRLSRDSNIRQLPLKTLLVYLELKKVIEAKYSYFAEYRFKFLQDQ
QFILNQFQGERRQFVEAIFTCSTKAKVWCQVDLDALWMHYQSERSRVVAALDYFHQNGWI
ELESKQLTDVYAVLPTQQSSETLEQHLYDLFQSKERKDIERIHTMLGLFQSSECLSYQLA
HYFADLNAPTECGHCSVCRGQIAVFPAQSNEPPEHEQVVSWVREFVQLSPTTISNEAVAR
FLCGISTPLISQLKATKKSGYGAMANVSFDKVIELVNEARA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtattccgttgcaacaaacacttcaatctgtgtttggttttgactcgttacgc
tcaggccaacaacctgtcattgaagccgtgatgagtggcaactcagcagcggcaatcttt
ccgacaggttccggtaaatcactctgctatcagctacccgcaactcagctgccaaacctt
actttggtgatctctcccctacttgccctaatgaaagaccaacttagctttttacaaagt
agaggcattgcggcagcatccattgatagtagccaaagtcgggaagagtctcagaaagtc
atggccggcgtgaaaaacggccagataaaaattctgatgatttcagtagagcgtctcaag
aatgaacgctttcgtgagtttatccgtcagatcccaatatcattaatggtggtagacgaa
gcacactgtatttccgaatgggggcataactttcgccctgattacctgaaattgccgcaa
tatcagcgtgagctgaacatttcccaatccttgctgcttaccgctacagcaacacccgcc
gttattgacgatatgcagcagaaattcaatatcgccagtgaacatattaccgttacgggc
ttctatcgtcccaacttagatatttcagtggtgccaagccaggaatcagaaaagcagact
cagctaaatactatcgtggcagcccagcctaccttgccaaccattgtctatgtgactcaa
caacaaacagctgagcaggtggcaaaatcgctaattcacatcggcattaacgcccatgct
tatcatgctggaatgaagagtgacgtccgggaaaaaattcagcagcagtttatggatagc
caaatcgactgtattgtcgcaacgattgcctttggtatgggcgtggacaaatcggatatc
cgccgtgtgattcacttcgacctgccgaaatcaattgagaactacgcacaggaaattggt
cgagccggacgtgatggtcaacgctctgaatgtattttacttggtaatacatctggtctg
acggtactggagaactttgtctatggtgacacccctgaacgtacctccatcagctatgta
ttagagcaagcgcgtgaacacactcctcagtgggaagtcgtgccattgcgcctgtctcgc
gacagcaatatacgccagttaccgctaaaaacactcttggtgtatctggagttaaaaaaa
gttatcgaggccaaatacagctactttgctgaatatcgcttcaagtttctccaagatcag
caatttattcttaatcagtttcaaggggaacgacgccagtttgtagaagccattttcact
tgctcaacaaaggccaaagtatggtgtcaggtagatttagacgcactctggatgcactat
caatcagagcgaagccgtgtggttgcggcactggattattttcatcaaaacggatggatt
gaactggagagcaaacagttaaccgatgtgtacgcggttcttcctactcaacaaagctca
gagacgctggaacaacatctttacgacctgtttcaatctaaagagcgcaaagatatcgag
cgtattcatacgatgttgggcttatttcaatcgtcagagtgcttaagctatcagctggca
cactactttgctgatctcaacgcgcctacagagtgcggtcattgctctgtttgccgtggc
caaatcgcggtgtttccggctcagtcaaatgaaccaccagaacatgaacaggtcgtatcc
tgggtgagggaatttgtacaattgtctccgaccaccatcagcaatgaggcagttgcccgg
ttcctatgtgggattagcacaccgcttatcagccaactcaaagcgacaaaaaaatccgga
tatggcgcgatggccaatgtatccttcgataaagtcatcgagctggtgaatgaagcccgt
gcttaa
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