Vibrio sp. EJY3: VEJY3_13235
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Entry
VEJY3_13235 CDS
T01683
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vej
Vibrio sp. EJY3
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vej03009
]
VEJY3_13235 (rumA)
Enzymes [BR:
vej01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VEJY3_13235 (rumA)
Ribosome biogenesis [BR:
vej03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VEJY3_13235 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
MTS
PCMT
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_11
Methyltransf_23
PrmA
Methyltransf_15
Methyltransf_12
Methyltransf_32
NodZ
Ribosomal_L22
Motif
Other DBs
NCBI-ProteinID:
AEX23123
LinkDB
All DBs
Position
1:complement(2956362..2957681)
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AA seq
439 aa
AA seq
DB search
MARIFQPKKKTQLNTRHQQVRVERLDHHGAGIAYLKKKPLFIDGALPGEEVVTQLVEEKS
KFARGKLIKILQLSDTRAEPFCPHYHECGGCDLQHLEYDQQLTHKQQTLRQLMRKFAGSD
IELDAPVLGEQLGYRRRARVSLFVDKKTRQLHFGFRKKQSKQIAQVTDCPVLAPQLNVLL
PEIYAELKQFKKPDQLGHVELVLGDNGPCITLRHMSNLTEPEVEALVKLAERHNATLYLM
PQTDQLDLISGEIPFYQENGVKVPFTPNNFIQVNQAVNQKMVAQAIQWLDPQDSDRVLDL
FCGLGNFSLPIAKLAKHVVGIEGVAEMVEKATNNASLNQINNAQFYHANLEQDFDGQVWA
AEKFDKVLLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLIEQGYKLTKLGM
LDMFPHTSHLESMALFEKS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcatctttcaaccgaaaaagaaaacccaactcaacactcgtcaccagcaggtg
cgcgttgaacgtttggatcatcatggcgcgggtatcgcttacctaaagaaaaagcctcta
tttattgatggcgcgctgccaggtgaggaagtggtgacacagctggtggaagagaaaagt
aagtttgcccgcggtaagctgatcaaaattttgcagctaagtgacactcgtgctgaacca
ttctgtccgcattaccatgagtgtggtggctgtgatttacagcacttggaatatgaccaa
caattgacgcacaaacagcagacactgcgtcagctcatgcgaaaatttgcaggcagtgat
atcgaacttgatgcgccagtgttaggcgagcagctaggctatcgacgtcgagcacgagtg
agcctgtttgtggataaaaaaacgcgccaactgcactttggttttcgaaaaaaacaaagt
aaacagattgctcaggtgaccgattgcccagtgttggctccacagctgaacgttttgctt
ccggaaatttacgcagagctaaaacaatttaaaaagcccgatcaacttggtcatgttgag
ctggtcttaggcgataacggaccttgtattacgctgcgccacatgagtaatctgactgaa
ccggaagttgaggctttggttaagcttgctgagcgtcataacgccacgctgtacctgatg
ccgcaaactgatcagcttgatttaatttcaggcgagataccgttttatcaggaaaatggt
gtgaaggtacctttcacgccaaataactttattcaggtcaaccaagcggtaaaccaaaaa
atggtggctcaggccatccagtggttagacccgcaagacagcgatcgagtgttagatttg
ttctgtgggctgggtaactttagcttgccaatcgctaagttggcgaaacacgttgtgggt
atagagggggtcgctgaaatggtagaaaaagcgacaaataatgcatccttgaaccaaatc
aacaacgcacaattttatcacgctaacctagagcaggactttgacggtcaggtttgggcg
gcagagaagtttgataaagtactgctcgatccggcgcgtgccggagcgagcgggatcatc
gatcaagtttccgctcttggggctcagcgcgtggtttatgtttcttgtaatcctgctacc
cttgcaagggacagtcagagcttaattgaacaaggctacaaattaaccaaattaggtatg
ctcgatatgttcccgcataccagccatttagaatccatggccttgtttgaaaagtcctag
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