Vibrio sp. EJY3: VEJY3_13880
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Entry
VEJY3_13880 CDS
T01683
Name
(GenBank) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vej
Vibrio sp. EJY3
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vej03019
]
VEJY3_13880
Messenger RNA biogenesis [BR:
vej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VEJY3_13880
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
DUF624
Motif
Other DBs
NCBI-ProteinID:
AEX23250
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All DBs
Position
1:complement(3097771..3099708)
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AA seq
645 aa
AA seq
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MFILFVGGTLSFKRLGQEYLTHYLEGIVEVVDKEMEDPDAAYSMQRWMPKMLQASNIVEM
TLTTNDAVVYRFKDTSHKMDASVLFEKEYPLTHNQDYVIYFKAIPPYLGYGYSMQALWSI
TLAVILIIFCLMRGVAWLKEQLAGSEMLEERGRMILAGRVEQYAKGDKSEWPYTASEALD
VLIEELQDARQERSRFDTFIRTQTFLDKLTGTANRVLFDSKLESSLLESGARGAVMLVRL
HDWKLAEEEQDKQVTDDFIVEVGSLLSNLVQRYPDVVFSRYYDSDFALFLPHQDAKGVAN
LASQCIRQLEKLTPPEPLEPDNWCHIGITMFKEGERHSQIIDEAETALRSAQLQNNNNWS
RFKKWNHDEEVRGSVRWRTLFDKALTPENLLLYAQPVFVMNDSSHKKPLYEALTCRLQDP
ENGIVKASRFISAVRQVGYETQMDKAVVNKFLRSFKDNFDHSKSYALSLTVVPFANREYF
KWFRYELLQLSREQRKCLNFEFVEAQFVRHLDFMRPVAKMLAGLGCQLMIGQAGRTIVSS
HYLKEVDIRYLKLHRSLVTKIDQRHENQLFIRSMLGAAANSKTKIVAVGIENRNELNTLL
ELGVYGGQGRYFATERQFLPRPQKMQPTRSESQVKPGRRNRWRKK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtttatcttatttgtcggcggcaccctctcttttaaacggcttgggcaagaatatctt
acccattatttagaagggatcgttgaggtggtcgacaaggagatggaagatccggatgcg
gcatattccatgcagcgctggatgcccaaaatgctgcaggccagcaacattgttgaaatg
acgttgacgaccaatgatgcggtcgtatatcggtttaaagacacgtcccataagatggac
gcgtcggtcttgtttgaaaaagagtatccgcttactcacaaccaggactatgtgatctat
tttaaggcgattcctccttacttaggttacggctattcaatgcaggcattgtggtcgatc
actctggcggtgattttgatcattttttgtctgatgcgtggcgtcgcttggttaaaagag
cagttagctggttcagaaatgctggaggagcgtggccgaatgattttggccggccgtgtt
gagcaatacgcaaaaggtgataaatccgagtggccttacaccgccagtgaagcgctcgat
gtgctcattgaagagctacaagatgcgcgtcaggagcgcagtaggtttgatactttcatt
cgaacgcagacttttttagacaagttaacgggaacggcgaaccgagtgctgttcgacagt
aagttggaatcctccttactagaaagcggtgcgcgtggtgcggtgatgcttgtacgcctt
catgactggaagttagctgaagaggaacaagataagcaagttaccgatgattttatcgtt
gaggtaggcagcctgctatctaacctggttcagcgttatcctgacgtggttttttcgcgc
tattacgactctgactttgcgttgtttttgcctcatcaggatgcaaaaggggtagcaaac
cttgcttcacaatgtattcgtcagcttgagaaattgacgccaccagaaccattggaacca
gataactggtgccacattggtatcacaatgtttaaagaaggtgagcgtcatagccagatt
attgatgaagcagaaactgcattacgcagcgcacagctacaaaataacaacaactggagt
cgcttcaaaaagtggaatcacgatgaggaagttcggggaagtgttagatggcgaaccttg
tttgataaagcgctgacccctgaaaatttgctactgtatgcacagccggtttttgtaatg
aatgattcatcacataaaaaaccgctgtatgaagcgttaacctgccgtcttcaagacccg
gaaaacggcattgtgaaagcgtccaggtttatctcagccgttagacaggtaggttacgaa
actcaaatggataaggctgtggttaataaattcttaagaagttttaaggataattttgac
cactcaaaatcatatgcactgagtttaactgtagttccatttgctaatcgagaatatttc
aaatggtttcgttatgaattgctacagttgtcacgtgagcaaagaaagtgtctcaatttt
gagtttgtggaagcacaatttgtaagacacttagactttatgcgcccagtggctaaaatg
ctggcaggtttaggatgccagctaatgattgggcaagctgggcgaactatcgtcagtagc
cattatttgaaagaggtcgacattcgttaccttaagctccatcgtagcttggtgaccaag
atagatcagcggcatgaaaaccagctttttattcgcagtatgttaggtgctgccgcaaac
agtaaaaccaaaatagtggcagtgggtattgagaaccggaatgaattaaatactttactt
gagttaggtgtatacggtggtcaaggtcgctattttgctacagagcgacaattccttccc
cgtccgcaaaagatgcagcccactcggtcagaatcccaagttaagccagggagacgaaat
cgctggcgtaaaaaataa
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