Vibrio sp. EJY3: VEJY3_15130
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Entry
VEJY3_15130 CDS
T01683
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vej
Vibrio sp. EJY3
Pathway
vej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEJY3_15130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vej03019
]
VEJY3_15130
Enzymes [BR:
vej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VEJY3_15130
Messenger RNA biogenesis [BR:
vej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEJY3_15130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AEX23496
LinkDB
All DBs
Position
1:3395408..3396721
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AA seq
437 aa
AA seq
DB search
MKKTHITEQKFADLGLEPQVIDGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLMTTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAETLIASTGLKAALAYG
GESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSN
EDKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILE
QFTKGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISFA
CEEYAINLPAIEEYIEHTIPVSEYDASALIQDLPAPIRMRAPRTQQRRTNTGGTRSGNRK
QQGRRPRQPRQSAPKQS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttggggttagagccccaagtt
attgatggattggataaaaaagggtttgagttttgtacccctatccaagccttggcgttg
ccggtactgctcaccggccaagacatcgcaggccaggcccaaacgggcactggtaaaaca
ctcgcgtttctcactgcaaccttcaaccacctaatgacgacaccggagcacgaaggccgc
aaaccaacacaaccacgtgccatcatcatggcgcctacgcgtgagttagcgattcagatc
tacaatgatgctgaaactctgattgcaagcacgggcctaaaagcggcactggcttacggt
ggtgaaagctacgacaagcaactggctaagctacaagatggtgtcgatatcctgatcggt
acgactggtcgtattatcgatttctataaacagcgcgtatttaatctaaacaacattcaa
gcggtggtgttagatgaagccgaccgcatgttcgatcttggttttattaaagacatccgt
ttcttgttccgccgtatgccagagccaaaagagcgtttgaacatgctgttctcagcaacg
ctgtcttaccgcgtacaagaactcgcgtttgaacacatgcataacccagaacatgttgtg
gtagaaccagagcaaaaaactggtcaccgcatccaggaagaacttttctatccttcaaat
gaagacaaaatggcgctccttcaaacacttatagaagaagaatggccagatcgtgcgatt
atatttgctaacaccaagcacaaatgtgaatcagtttggggtcacctggcggcagacggc
catcgtgttggtctattgacaggtgatgtaccgcagaagaaacgtgaaaagattcttgag
cagttcactaaaggtgatgttgatatcctagtggcgacggatgtagcggctcgtggcctg
catattcctcaagtaacacacgtattcaactatgatctgccagacgattgtgaagactac
gtacaccgtatcggtcgtaccggtcgagcaggtgcgagcggcaactctatcagctttgct
tgtgaagagtacgcgatcaacctacctgcgattgaagaatacattgaacacactatccct
gtatcggaatatgatgcatcagctctaattcaagatctgccagctccaatccgtatgcgt
gcaccacgaacgcaacaacgccgtacgaatacaggtggcactcgctctggtaaccgtaag
caacaaggacgtcgtcctcgtcagccacgtcaatcagcgccaaaacaatcataa
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