Vibrio sp. EJY3: VEJY3_17021
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Entry
VEJY3_17021 CDS
T01683
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vej
Vibrio sp. EJY3
Pathway
vej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEJY3_17021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vej03019
]
VEJY3_17021
03016 Transfer RNA biogenesis [BR:
vej03016
]
VEJY3_17021
Enzymes [BR:
vej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VEJY3_17021
Messenger RNA biogenesis [BR:
vej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VEJY3_17021
Transfer RNA biogenesis [BR:
vej03016
]
Prokaryotic type
tRNA degradation factors
VEJY3_17021
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
WHD_RNase_R
CSD
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AEX23825
LinkDB
All DBs
Position
2:complement(269916..272168)
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AA seq
750 aa
AA seq
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MKINISAQSINHTKYDDIIPSRDFILSLFDKVKSYLSHEQISHSAGLDEKPQKDALKKRL
RAMERDGQLIFTHRRGYKKVDQAFLVTGKISTHADGFGFVTYDSNEKDLFLPKHQLTHVF
DGDIVLVLKGNAQQQGRSNHRLIKIVERKTIHIVGLLKKKGSNFYLVPESTKLTQTIHVT
PNELIAKNVGKLVHCKVTAYPDHRQSTTVEVAEVLGRAGEAGIEVKLALRRHGINDKWDK
EVLHAASVFGSQVDEKDKTSRVDYRDLPFVTIDGDDAKDFDDAVYGYQMDNGQWKLFVAI
ADVSHYVQPNDHLDLEAQSRATSVYFPGCVVPMLPESLSNGLCSLNPNEDRLVMVCEMTF
DNEGNMLDSEFSEGIIHSHARLTYNEANRIVMQSPARTKYQSNNPKNNISQHLVNLHRLY
LNLSGQRKIRGAIDFDTQELAFTLNNKKKIASIVPVVRNDAHRMIEEFMLCANVATAQFL
ERHKISSLYRVHSGPQMKKLSSLRMLLADRGLTLAGGDKPTSHDYNSLLEQVRELDESDI
IRTLLLRSQSQAEYSPKNMGHFGLAYDAYAHFTSPIRRYPDLLVHRAIRAKLREQSNGKL
RSLLLKFNPIRKLAGIENNYPYDTKTIEQLSVHCSHQSRQADEVSREVESALKCHYMKPF
IGQSFMGTVSGVTHFGVFVELEENRIEGLIPLSSFQNGEFEFDAIKQKIASPTTTFTLGT
QVKVTVKEIDSKQRKIIFNFADSSESSLKQ
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaatatatccgctcaatcaataaaccacactaaatatgacgatattattcct
agccgagattttattcttagcttgttcgacaaagtcaaaagctatttaagccatgaacag
atctctcactctgcgggcttggatgaaaaaccacaaaaagacgccttgaaaaagcgctta
cgtgcaatggagcgagacgggcagttgatttttactcatcgtagaggttacaaaaaagtc
gatcaggcttttttagttacagggaaaataagtactcacgctgacggctttggctttgtt
acatacgacagcaatgaaaaagaccttttcttacctaaacatcaactgactcatgttttc
gatggcgatatcgtgctggttctgaaaggcaatgctcaacagcaaggtcgttcaaaccac
cgcttgatcaagatcgtggaacgtaaaacgattcatattgttggcttgttaaagaaaaaa
ggctctaacttctatttagtgccagaaagcacaaaactgactcaaaccatccatgtcacc
ccaaatgaactcatcgccaaaaatgtcggtaaactcgttcattgtaaagtcactgcatac
ccggatcacagacaatcaaccacggttgaagtcgcagaagtattgggtcgtgcgggagag
gctggcatcgaagtaaaattggcattgcgtcgccatggcatcaatgacaaatgggataag
gaagtactccatgcagcttccgtatttggctctcaagtcgacgaaaaagacaaaacatct
cgcgtggattaccgagatttacctttcgtcactatcgacggggatgatgccaaagacttt
gatgatgcggtttatgggtatcaaatggacaatggtcaatggaagcttttcgtcgcaatc
gctgacgtatctcattatgtccaaccaaacgaccacttagaccttgaagcacagtcgcgt
gcaacatccgtttactttcctgggtgtgtcgtgccaatgttaccagagtcattatctaac
ggtttgtgttcactaaatcctaatgaagatagattagtgatggtatgtgagatgaccttt
gataacgaagggaacatgctagattcggagttttctgaagggattattcactcacatgcc
aggctgacgtacaacgaagctaaccggattgttatgcagtctcctgcgagaacaaaatac
caaagcaacaatcctaaaaataatatctctcagcatttggtgaatcttcatcgcttgtat
ctgaacttatctggtcagcgtaaaatccgtggagccattgattttgacactcaagagctc
gcttttacgttaaataacaaaaagaagattgcttctatcgttccagttgttcgaaatgac
gcccaccgaatgatcgaagagtttatgctctgcgctaatgttgctacagcacagttttta
gagcgacataaaatatcgagtctatatcgcgtgcactccggccctcaaatgaaaaagcta
tcttcattgagaatgttacttgcagacagaggactaacgttagcaggcggtgataagcca
acctctcacgattacaactcgttattggaacaagttcgagaattggatgagagcgacata
atacgcaccttgctcttgcgctctcaaagccaagctgagtattcgcctaaaaacatgggc
cactttggtttagcttatgatgcttacgcgcactttacctcgccaattcgtcgttaccct
gacttactcgttcaccgcgctattcgagccaaactaagagaacaaagtaatggcaagcta
cgtagtctgttattgaagttcaaccctatacgcaaactagccggcatagagaataactac
ccttacgatacaaaaacgattgagcagctcagcgtgcattgttcacatcaatctcgccaa
gctgatgaagtaagtcgtgaggttgagtcggcgctaaaatgtcattatatgaaaccattc
attggacaaagcttcatggggaccgtttctggtgttacacacttcggtgtttttgtggag
ttagaggaaaaccgaattgaaggcctcataccattatcaagtttccagaacggggagttt
gaatttgatgcgatcaaacaaaaaattgccagcccaaccactaccttcacgttaggtact
caagtcaaagtgaccgtgaaagaaatcgattctaaacaaagaaaaattatatttaacttc
gcggactctagtgaatcgtcactaaaacagtag
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