Vibrio sp. EJY3: VEJY3_20056
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Entry
VEJY3_20056 CDS
T01683
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vej
Vibrio sp. EJY3
Pathway
vej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEJY3_20056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vej03019
]
VEJY3_20056
Enzymes [BR:
vej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VEJY3_20056
Messenger RNA biogenesis [BR:
vej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEJY3_20056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Helicase_RecD
P-loop_SecA
Helicase_C_2
ERCC3_RAD25_C
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AEX24428
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Position
2:complement(948030..949283)
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AA seq
417 aa
AA seq
DB search
MSVNFADLGIEQNLVETLSTLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLP
IIQSVQQEKLNGTPKALILVPTRELAQQVFESLSQYASQTALRIVCVYGGTSIGVQKKKL
EDGADILIATPGRLLDHLFNGNVNISKTNTLVLDEADRMLDMGFWPDLQRILRRLPDEKQ
IMLFSATFEKRIKTIAYKLMDSPVEIEVTPPNTTAETVTQIVYPVDKKRKRELLAYLIGS
KNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT
DVAARGLDIQELEQVINFDMPFKAEDYVHRIGRTGRAGNSGLAVSLMSRDEEYLLHAIEN
LLDQRLPQEWLAGFEPSLIEEVEPERHGGGGRKSRSAEKRKLKAKLAIHKNRGKNRR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaattttgctgaccttggcattgaacaaaatctggtggaaactctgagcaca
ttaaacatcgtgactccaacaccggtgcaagaaaagtcgattccccatgttctggaagga
aaaaacctgctcgctgctgcacaaacgggtactggtaaaacggctgcgtttggactgcct
attattcaaagcgtacagcaagaaaaactgaacggaacgccaaaagctctaattttggta
cctacgcgtgaactcgctcaacaagtcttcgaaagtttgtctcagtatgcgtcgcagacg
gcattacgcattgtttgtgtgtacggtggtaccagtattggtgttcagaagaaaaagctt
gaggatggcgcggacattctgattgcgacccctggacgcttgttggatcatttgtttaac
ggcaatgtaaacatctcaaagacgaatacgcttgtactcgatgaagccgatcgtatgtta
gatatgggattttggcctgatttgcaacgaatcttacgccgcttgccagatgaaaaacag
atcatgctattttccgcaacgtttgaaaagcgcattaaaaccattgcttataagctgatg
gattctccagttgaaattgaagttactccaccaaacacgaccgctgaaacggttacacag
atcgtttatcccgtcgacaagaagcgtaaacgtgaattactcgcctatttaattggttca
aaaaactggcaacaagtgctggtgtttaccaaaacaaaacagggtagtgacgaactggcg
aaagagttaaagctagatggcataaaagcagtgtcgattaatggtgataaatcacaaggc
gctcgtcaacgcgcattggatgaatttaaacagggtaaagtacgtgcattgattgcgact
gatgttgcagcccgagggcttgatattcaggaactagagcaagtaattaactttgatatg
ccgtttaaagctgaagattacgtacaccgtattggtcgtacaggacgagcgggtaattct
ggacttgccgtatccttaatgagccgagacgaagagtatctgttgcatgcgattgaaaac
ttactggatcagcgattgccacaagaatggctggcgggttttgaacctagtttaatcgaa
gaggtcgagcctgaacgtcacggtggtggtggccgtaaaagtcgctcggcagaaaaacga
aaacttaaagccaagttagctatccataaaaatcgtggtaaaaaccgtcgataa
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