Vollenhovia emeryi: 105558829
Help
Entry
105558829 CDS
T06016
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
vem
Vollenhovia emeryi
Pathway
vem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105558829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vem03019
]
105558829
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105558829
mRNA degradation factors
5'-3' decay
Decapping complex
105558829
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PLATZ
Motif
Other DBs
NCBI-GeneID:
105558829
NCBI-ProteinID:
XP_011862137
LinkDB
All DBs
Position
Unknown
AA seq
723 aa
AA seq
DB search
MADTFFGFDTTLGDNNQEDGLECPLDEDELEEEEYDALNDETFGPDAAIGDWEEDHEKLA
EITESNRLHNQSATSKKTISNINIEDNLSHLVLDKEGIVPRPGVWGSPLTLSPPKPRLSL
PNACTVEELERGFIAIANMPPPGLSKPQTQQQQKKSEGSLLFEALSLKEKLHQVNGLPPP
RFPPGLGLPGAHPIVLPNIRPPHPQLMQHPRLLGLINQPGNVLRYPPPHLMLPQPVPRQA
LHGSYGFPPQLHPNLGGPQFLRPDHMMPAFPNNQANHQQHQHSYSHLGNQRNQNRSYYHN
EQQAGHQPFFKNNQYPRNHDRNNQRPYHHQHYSHSVNGNASGEYEHSGKLAIKPHEKQWL
INIQLLQLNTIQPYVDDHYYVVFCDKRNRQHANQEQKDKKHHNNGYHRDHRDWEPSPQAS
SRSAYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNSDSQSTSQSQQKDTKKTRQLLLEI
ERLYTLQFKLEDLSNPLASIPELQQPQEGESETNATKTEPELISMILICIQQLIQDDKLA
SMLSIRKGKTLLLRFLPHLNVTEYSKQLRELWTAIFKGLAVIGRRDCHILTDFYSEFRRW
LDTVKDFDTILRLARALSDSATVHPVKNNSLTFALLNKFGVSAIAAMLEQAEQLCVTDDS
LPSEWSTFVVTIVELIGDSSPCVAPCQPITANTLNEHLNRISSLKLERYTALACLLTDAN
PLR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacttttttcggtttcgataccacgctcggagataacaatcaagaagatgga
ctggaatgtccattggatgaagacgagctcgaggaagaggagtacgacgcgctgaacgat
gagacgttcggtcccgatgccgctatcggtgattgggaggaagatcatgagaaacttgcc
gaaattactgaatcaaatcgccttcataatcagagtgcaacaagtaaaaagactatttct
aacataaatatcgaagataatttatcacatttggtattggataaggaaggaatagttccc
cgacccggtgtatggggtagtcccttgactttatcacctccgaagccacgattgtcttta
ccaaatgcctgcacggtggaagagttggaaagggggtttattgcaatagcaaatatgccg
ccaccaggtctcagtaaaccacaaacgcaacaacagcagaagaagtccgagggttcgctt
ctctttgaggccctttctttgaaagagaagcttcatcaagtcaatggcctacctccacca
cgttttccaccagggctgggtctacctggagcacatcctatagtcttgcccaatataaga
ccaccacatcctcagttgatgcaacatcctagattattaggcttaattaatcaacctggt
aatgtgttacgttatcctcctccgcatttaatgttgccacaaccagttccaaggcaagct
cttcatggctcctatggctttcctcctcaactacatcctaatctaggaggtccgcagttc
cttcggccggatcacatgatgcctgcatttcctaacaaccaagccaatcatcagcaacac
caacattcttattcacacttaggaaatcagagaaaccagaacagatcttactaccataac
gaacaacaagccggacatcaaccattttttaaaaataatcaatatcctcgcaatcatgac
agaaataatcaacgaccttatcatcatcaacattactcgcacagcgttaacggtaatgct
tcgggagaatacgaacactcaggaaaacttgctataaaacctcatgagaagcaatggtta
attaatattcaattattacaacttaatacaattcaaccgtacgtcgatgaccattattat
gtcgtattctgtgataaacggaatagacaacatgcaaatcaagaacaaaaagataagaag
caccataataatggatatcatagggatcacagagattgggaaccgtcacctcaagcctct
tcaagatcagcatatacgccagctcaatttgagaattcattaggcaaacttcattgcagc
agtgtgacagcaccacgtaaacttattgacatggatgtcgtatcgaatagtgactctcag
tctacttcacagtctcaacagaaggacactaaaaaaacacgacaattacttcttgaaatt
gagagactgtatacactgcaattcaagcttgaagatctgagtaatcctctcgcttcaatt
ccggaactgcaacaaccacaggaaggggaatcggaaacaaatgcgactaaaactgaaccg
gaattaataagcatgattttaatatgtatacaacaattaatacaagatgataaattagct
agtatgctaagtattcgaaaaggaaagacattattactgcgttttttacctcacctgaac
gtgacagaatatagtaagcagttgagagaattgtggactgcgatatttaagggattagcc
gtgataggacgtagagattgtcatatattgacagacttttattccgaatttcgaaggtgg
ctcgatacggtgaaagattttgataccatactgcgattagcacgagcattatccgactct
gctactgttcatcctgttaaaaataatagcttaacatttgccctcctgaataagtttggt
gtgtctgcaatagcagcgatgctcgagcaagctgaacaattgtgtgtcacggatgattcc
ctgccttctgaatggtcaacttttgtagtgacaatagttgagctaattggtgactcgtct
ccctgcgtcgcaccttgtcaaccaattactgcaaatacgctcaatgaacacctgaatcgg
atttctagtttaaaactagaaaggtatacagctctagcgtgcttgttgactgatgccaat
ccgttacgatag
DBGET
integrated database retrieval system
