Vollenhovia emeryi: 105559299
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Entry
105559299 CDS
T06016
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vem
Vollenhovia emeryi
Pathway
vem03013
Nucleocytoplasmic transport
vem03015
mRNA surveillance pathway
vem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105559299
09122 Translation
03013 Nucleocytoplasmic transport
105559299
03015 mRNA surveillance pathway
105559299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vem03019
]
105559299
03041 Spliceosome [BR:
vem03041
]
105559299
Enzymes [BR:
vem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105559299
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105559299
Spliceosome [BR:
vem03041
]
Complex C
Other components
EJC/TREX
105559299
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105559299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105559299
NCBI-ProteinID:
XP_011862875
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDIPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataacgatgatcttttggattatgaagacgaagagcagactgagcaggtggtc
gacggaagcggagacatccccgctaagaaggaggtgaagggcacgtatgtctctatccac
agcagtgggtttagagactttcttctcaaacctgagatccttcgtgctatcgtcgactgt
ggctttgaacatccatctgaagttcaacatgaatgtattcctcaagcggttcttggcatg
gatatattgtgccaagcaaaatcgggtatgggaaaaacagcggtgtttgtattagctacc
cttcaacagctggaattaacggagaatcaagtgtacgtcttggtaatgtgccatactcga
gagctggcttttcaaatcagtaaggaatatgagaggtttagcaagtacatgccacatgta
aaggttggcgtgtttttcggtggcttacctatccagaaagatgaggaggttttgaaaact
gtatgtcctcacatcgtcgtcggcactccgggtcgtattcttgctcttgtacggaacaaa
aaactgaatttaaaacacctgaaacactttatactggacgaatgcgacaagatgcttgag
ttgctagatatgcgtcgggacgtacaggaaatattcagaagcacaccgcacagcaaacaa
gtgatgatgtttagcgccacgctgtccaaggagatacgtcctgtctgcaaaaagttcatg
caagatccaatggaggtctatgtcgacgacgaggcgaagctcactttgaacggtctccag
caacattacgttaaattgaaggagaacgagaagaacaagaagttatttgaactacttgat
gttcttgagttcaatcaggtcgtcatatttgtgaagtctgtacaaagatgtatggcttta
gcgcaacttttgacggaacagaatttccctgcgatcgggattcaccggggcatgacgcag
gaggagcgtctgtccagatatcaacagttcaaagatttccagaaacgtattttggtggcg
acaaatctgttcggaagagggatggatatagaacgtgtgaacattgtattcaactacgat
atgccagaagattccgacacatacctgcatagagtggcgcgcgctggtcgttttggtact
aagggccttgccattacattagtaagcgacgaaagtgacgccaagatactgaatgatgtt
caagagaggtttgacgtaaatattacagaattaccagacgaaatcgatctcgcttcatac
attgagggacgataa
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