Vollenhovia emeryi: 105559809
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Entry
105559809 CDS
T06016
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
vem
Vollenhovia emeryi
Pathway
vem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105559809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vem03041
]
105559809
Spliceosome [BR:
vem03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105559809
Complex C
U5 SnRNP specific factors
105559809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
105559809
NCBI-ProteinID:
XP_011863794
LinkDB
All DBs
Position
Unknown
AA seq
2371 aa
AA seq
DB search
MSIPPYLLTPNPWATMMVQQQAQIAAQVHAQAAAHAQAAHHAHMQAIGGPPLPQMPKQPE
VLSEDKLQEKAQKWQQLQSKRFAEKRKFGFVDAQKEDMPAEHIRKIIRDHGDMSSRKYRH
DKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVYIAQ
WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQIELDSEEDESV
ASWFYEHKPLVGTKHVNGSTYRRWNLTLPQMATLYRLANQLLTDLVDQNFFYLFDPKSFF
TAKALNMAIPGGPKFEPLVKDSNAADEDWNEFNDINKIIIRQPIRTEYRIAFPYLYNNMP
HFVHLSWYHAPNVVYIKTEDPDLPAFYFDPLINPISHRNSLKTMEPQIEDDEDFVLPGEV
QPFLQETPLYTDNTANGIALLWAPRPFNTRSGRTRRAIDIPLVKSWYREHCPPGQPVKVR
VSYQKLLKYFVLNALKHRPPKPQKKRYLFRSFKSTKFFQTTTIDWVEAGLQVCRQGYNML
NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIIDSHVQY
RLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKG
PGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLE
LRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVK
MKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISPE
EAVAIFTTSVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREEL
GLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAYLDQ
YLWYEADKRRLFPPWVKPADTEPPPLLVYKWCQGINNLQDVWDVSEGECNVLLESKFEKL
YEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIAQYY
GLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDVASETAHPIRLYCRYVDRIHLFLRFSAD
EARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRS
TTTIQWENSFVSVYSKDNPNLLFNMSGFECRILPKCRTTHEEFTHRDGVWNLQNEITKER
TAQCFLRVDDESLQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQEL
LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSK
QTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLT
LEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKL
WNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRS
GLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQK
VHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSL
LADSKDVMDNTTTQKYWIDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIA
IDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYLS
SQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHT
SVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVI
KGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALH
VNTERTKVVLKPDKTTITEPHHIWPSLTDDEWIKVEVQLKDLILADYGKKNNVNVASLTQ
SEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITATTSNYET
QTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQI
AGYLYGISPPDNPQVKEIRCIVMAPQWGTHQTVHLPNTLPNHQYLKEMEPLGWIHTQPNE
LPQLSPQDISTHARIMAENSIWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGKQNTDK
GNNPKGYLPSHYEKVQMLLSDRFLGFFMVPSQGSWNYNFMGVRHDPNMKYELQLANPKEF
YHEVHRPAHFLNFSSLEDGEGVGADREDMFA
NT seq
7116 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcccgccgtatttgttgaccccaaacccatgggccacgatgatggtccagcag
caggcgcagatagcggcccaggtgcacgcccaggccgcggcccacgcacaagctgcccat
cacgctcatatgcaggccataggcggaccgccgttgccccagatgcccaagcagccggag
gtcctgtccgaggacaagctccaggagaaagcgcaaaaatggcagcagctgcagtccaag
cggttcgcggagaagagaaagttcggctttgtggacgctcagaaggaggacatgccggcc
gagcatataaggaagatcatcagggatcacggcgacatgagcagcaggaagtaccgacac
gacaagcgtgtttacttgggcgcgttgaagtacatgccacatgccgtgatgaaactgttg
gaaaatatgcctatgccgtgggaacaaataagggacgtgaaggtcttgtatcacatcacc
ggagccatcacgttcgtcaatgagatcccttgggttatagagcctgtgtacatagctcaa
tggggcaccatgtggattatgatgaggcgagagaagagagatcgtaggcatttcaaaaga
atgcgattcccgccctttgacgacgaagagcctcccctagattacgcggacaacgttctg
gacgtggaaccgttggaagctattcagatcgagctcgattcggaggaggacgagtctgtg
gcgtcgtggttttacgaacacaaacccctggtcgggacaaaacatgttaatggatctacg
taccgaagatggaacttgacgctaccccaaatggccaccctgtaccgcttggccaatcaa
ttgttgaccgacttggtagatcaaaatttcttctacctgtttgaccccaagtcattcttc
accgcaaaagccttgaacatggctatccccgggggaccaaaattcgagccgttggtgaag
gattcgaacgcagctgatgaagattggaacgagttcaatgatataaataagatcattatc
agacaacctatcagaacggaatataggattgcattcccttacttgtataataatatgcct
cattttgtgcatctgtcatggtaccatgcaccaaatgttgtatacataaaaactgaagat
ccagacttgcctgcgttctacttcgacccattaatcaacccaatatctcataggaattca
ttaaagacgatggagccgcaaatcgaggacgatgaagacttcgttttacccggtgaggtg
caaccgttcctgcaggagacacctctttacaccgacaacacagcgaatggaatagcgctt
ctctgggcaccgaggccgtttaacacacgttccggtagaacgaggagggccatcgacatc
ccgttagtcaagtcgtggtacagggagcactgtccgcctggacaacccgtgaaagtgcga
gtcagctaccagaaattgctgaaatactttgtgctgaacgctctgaagcacaggccaccg
aaaccgcagaagaaacgctacttattccgttcgttcaagtcgaccaagtttttccagacg
acaacgatagactgggtggaagccggcctgcaggtgtgtcgtcaaggatacaatatgttg
aatctgctgatacaccggaagaacctcaactatctccacttggattacaatttcaatttg
aaacccgtcaagacgctcacgacgaaagagaggaagaagtcgcgcttcggcaacgctttc
catctgtgtcgcgagattctccgcttgactaagctcattatcgattctcatgttcagtat
cgactgaacaacgtggacgcttttcagctcgccgacgggctgcagtacatctttgcacac
gtcggtcagttgaccggcatgtatcggtacaagtacaaattaatgcggcagattagaatg
tgtaaggacttgaaacatctaatctattatcgtttcaataccggaccagtcggcaaaggg
ccaggttgtggattctgggcgcctggctggcgcgtctggctcttcttcatgaggggcatc
actccgctgttggagagatggctgggtaatctactgtccagacaatttgaaggtcgccat
tcgaagggcgtagcgaaaacggtgacgaagcagcgggtcgaatcgcactttgatctcgag
ttgcgggcatccgtcatgcatgacatagttgacatgatgccagagggaataaagcaaaac
aaggcgcggacgatccttcaacatctgagcgaggcctggcgttgttggaaggcaaatatt
ccctggaaggtgccgggtttaccaattccgatcgagaacatgatattgcgttatgtcaag
atgaaagccgattggtggacgaacactgctcattataatcgagagaggattcgacgcgga
gccacggtggataaaaccgtgtgcaagaagaatcttggccgtttgacgcgtctatacttg
aaagcagagcaagaacgacagcacaattacttgaaggacggtccgtacatatcgccggag
gaggctgtagccatattcactacttcggtgcattggctggagtcgcggagattcgcgccg
ataccttttccgccgttatcctacaagcacgatacaaagctgctgatattggctttggaa
cgcctgaaggaagcttatagcgttaagtctagattgaatcaaagtcaacgtgaagagcta
ggtttgatagagcaagcgtacgacaatccgcacgaggcgctatcccgaatcaagagacat
ttgctcacgcagagggcctttaaggaagttggcatcgagttcatggatctttatagtcac
ttgattcctgtgtacgacgtggagccgctcgagaagatcacggacgcttatctcgatcaa
tacctatggtacgaggcggacaagagacgattgttcccaccgtgggtgaaaccggccgac
acggagccgccgccgctcctcgtctacaagtggtgccagggtatcaacaatctccaggac
gtgtgggatgttagtgagggcgaatgcaacgtgttgctcgaatcgaaatttgagaagctg
tacgagaagatcgatcttacgctgctcaacagactgttgcgcctgatagtcgatcacaat
atcgccgattacatgacggcgaagaacaacgtggtcatcaactacaaggacatgaaccac
acaaacagctacggcattatcagggggctgcaatttgcatcttttatcgcccagtactat
ggactggtgttagatctgctcgtgctaggtctccaacgagccagcgagatggctggcccg
ccgcaaatgccgaacgacttcttgacgttccaggacgtcgcctccgaaacggcgcatcct
attcgattgtactgccgctatgtcgacagaatacacttattcctgcgcttctctgccgac
gaagcgagagatcttatccagcgttatctcaccgagcatcctgatccaaacaacgagaat
atcgtcggctacaacaataaaaagtgttggccgcgagatgcccgtatgaggctgatgaag
cacgacgtgaatctaggccgcgccgttttctgggacatcaagaatcgactaccacgctcc
accaccactattcagtgggagaacagcttcgtcagcgtttacagcaaagacaatcccaac
ttgttgttcaacatgagtggcttcgagtgcaggattctgcccaagtgcagaacaacacac
gaggagtttacgcatcgggacggcgtctggaatctccagaacgaaatcacgaaggagaga
acggcgcagtgcttcctgcgcgtcgacgacgagagcttgcagcgcttccacaatcgcgtc
agacaaatcctgatggcctcgggctcgaccactttcacgaaaattgtcaacaagtggaat
accgcattgatcggtctaatgacttatttccgagaagcggtggtgaacacgcaggagttg
ttagatctgctggtcaagtgcgaaaacaaaattcagactcgcatcaagatcggactgaat
tcgaaaatgccgtcgcgtttcccgcccgtcgtcttttacacgcccaaggaattgggtggt
ctggggatgctgtcgatgggtcacgtgttaataccgcagtcagacttgagatggtcgaag
caaaccgacgtcggcatcactcattttcgctcgggtatgagccacgacgaggatcaactg
atcccgaacttgtaccgttacatacaaccgtgggaatcggaattcatagattctcagcgc
gtctgggcggagtacgccctgaagcggcaggaggctaacgctcagaatcgcaggctcacg
ttggaagacctcgaggacagctgggatcgcggcattcccagaataaacacgctgttccag
aaggaccggcacacgctggcttacgacaagggctggcgcattcgcacggagttcaagcag
tatcaggtgttgaagcaaaacccgttttggtggacccaccagcgtcacgacggcaaactg
tggaatctgaataactatcgaactgacatgatccaggcgcttggcggtgtcgagggcatc
ctcgagcacaccctcttcaagggtacctacttcccgacgtgggaaggtctgttctgggag
aaggcatccggcttcgaggaatccatgaagtacaagaagctgacaaacgctcaacgctcc
ggtctcaaccagattccgaatcgtcgattcaccctgtggtggtcgcccaccattaaccgc
gccaacgtttacgtcggtttccaggtgcagctcgatctcacggggatattcatgcacggg
aaaataccgactctgaagatctccttgatccagatattccgcgctcacttgtggcagaag
gtgcacgagtcgatcgtgatggatctctgccaagtgttcgatcaagagttggacgcgcta
gaaattgagaccgtgcagaaggagacgatacatccgcgcaagtcttacaagatgaattcc
tcgtgcgccgacattctactgttttccgcctacaagtggaacgtgtctcggccgtccctt
ctcgccgactccaaggatgtgatggataacacgaccacgcaaaagtactggatcgacgtg
cagctgagatggggcgactacgattcgcacgacatcgagcggtacgctcgtgccaagttt
ctcgactataccacggacaacatgtctatctatccgtcacccaccggtctcctcatagcc
atcgatctggcgtacaacttgcacagcgcctacggcaattggttccccggctgcaaacct
ctcatacagcaagccatggcgaagatcatgaaggcaaatccggccttgtacgtgttacgc
gagcgtatccgcaaggcgctgcagttgtactcgtcggaaccgacggagccttacctctcc
tcgcaaaactacggcgagctcttctccaatcagattatctggttcgtcgacgacacgaac
gtgtatcgtgtgacaatccacaagaccttcgagggcaacttgacgacgaagccgataaac
ggcgcgatcttcatcttcaatccgcgcacgggtcagctcttcctcaagattattcacacc
tctgtctgggcgggccaaaagcgtctcggtcagctggccaagtggaagaccgccgaggaa
gttgccgcgctgattcgctctctgccagtggaggagcaaccgaagcagattatcgtcacc
agaaagggaatgttggatccgctggaggtgcacttgctggacttccccaacatagtcatc
aagggatctgagttgcagctaccgttccaggcgtgtctcaaagtggagaagtttggcgat
ctgattttgaaggcgaccgagccgcagatggtgctgttcaatctttacgacgactggctg
aagaccatctcgtcctacaccgcgttctcgcgattgattttgatcctacgcgctctacac
gtcaacaccgagagaaccaaggtcgttctcaagcccgacaagaccaccatcaccgagccg
catcacatatggccgtcgctgacggacgacgaatggattaaagtggaggtgcaactcaag
gacctgatcctggcggactacggcaagaagaacaacgtcaatgtcgcgtcgctcacgcag
tccgagatccgcgacatcattctgggcatggagataagcgccccgtccgcgcaacggcaa
cagatcgccgagattgagaagcagactaaggaacagagccagctgaccgccaccaccacg
cgaacggtcaacaaacacggcgacgagatcatcaccgcgactacgtccaactacgagacg
cagactttcagctcgaagaccgaatggcgagtgcgtgccatctccgcgaccaatctccac
cttagaacgaaccacatctacgtttcgtccgatgatatcaaggaaaccggctacacttat
atcttgcctaagaatgtgctcaagaaatttgtcaccatttcggatctgcgagcccaaata
gctggctatttgtacggcatcagtccacccgacaatcctcaggtgaaagagatcagatgt
atcgtaatggcgccgcaatggggaactcatcagaccgttcatttgccgaatacgctacct
aaccatcagtatttgaaggagatggagccgctaggttggatacacacgcagccgaacgag
ctgccgcagctctcgccgcaggacatatccactcacgcccggattatggcggagaattcc
atctgggacggcgaaaagacgatcgttataacttgcagtttcacgcccggctcctgctcg
ctcacagcgtacaagctgactccgagcggcttcgaatggggcaagcagaacaccgacaag
ggcaacaatccgaagggttatctacccagccattacgagaaggtgcagatgcttctgtcc
gatcgtttcctcggctttttcatggtacccagtcaaggctcgtggaactacaacttcatg
ggcgtgaggcacgatcccaacatgaagtacgagttacaactagcgaatccaaaggaattc
tatcacgaggtgcacaggccggcccacttcctcaacttctcgagtttggaagacggcgag
ggcgttggggctgatcgagaagacatgttcgcgtaa
DBGET
integrated database retrieval system
