Vollenhovia emeryi: 105561427
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Entry
105561427 CDS
T06016
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
vem
Vollenhovia emeryi
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vem01009
]
105561427
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vem03019
]
105561427
04131 Membrane trafficking [BR:
vem04131
]
105561427
03036 Chromosome and associated proteins [BR:
vem03036
]
105561427
Enzymes [BR:
vem01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
105561427
Protein phosphatases and associated proteins [BR:
vem01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105561427
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
105561427
Membrane trafficking [BR:
vem04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
105561427
Chromosome and associated proteins [BR:
vem03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
105561427
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Rotamase_2
zf-UBP_var
C1_2
Motif
Other DBs
NCBI-GeneID:
105561427
NCBI-ProteinID:
XP_011866787
LinkDB
All DBs
Position
Unknown
AA seq
1172 aa
AA seq
DB search
MTDSTVNLDLFTAAKQLADSEIELIKVIENSSKCQRTAANMFTNAKKTKKSGKSKNARPS
AALLAAKQEAAKRQLSDKKSNTFIPDMYQRSIDAYKTVRKETGLVFDRSMAEHECLWDPN
YPECPARFTRVLQRCEKLGLVQRCKLVEPRHATENELLTKHSQKQIDILKATDGSTDTEN
LELVSSKYDCVFIHPSTYRLSLLAVGSTINLVESICKNEIQNGMAIIRPPGHHAMKSEYC
GYCFFNNVALAAEKALSSGLANRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEYGEF
WPNLRESDFHYVGEDLGEGYNFNIPLNKTGMTNADYIAIFQQVLLPMAYEFQPDLIIVSA
GYDAALGCPEGEMLITPACYSHLLSSLLSLANGKVAVVLEGGYCLKSLAESAALTLRTLL
GDPCPILQTLDLPSLSIRDTILNAIYAHKPYWKCYQYQDTHSINSVTHNKEEIANRHVVM
VTYKGSEVKLDKYDTRNCYPIQSKETLEAVEKKLNNLILLTNLRKAPHRVCIVYDEKMQR
HTNISDSSHPEQPSRISSIYKNHEEHGLLERCHLLQGRSATIEELSLVHSKDYIDDIKKT
SILKLKELQKQASDYNSVYLHTETWSSACISTGSLLQVVDAVLNGECQSGVAIVRPPGHH
AEKDIACGFCIFNNIAVAAMYAVQFHHVKRVLIVDWDVHHGNGTQSIFEEDPKVLYVSVH
RYDNGSFFPNSKLANYTSVGLNAGEGFNVNIPWNKKGMGDAEYVAAFQQVVMPIAYQFNP
ELVLVSAGFDACNGDTLGGCLVTPELYGHLTHALSSLANGRVILSLEGGYNINSISHAMT
MCTKALLGDPLPMLDPNLVPCTSAINSINNVLKTHKKFWPNLQYGMSLPKEKLLPKVKAI
PNKLEEQGRNADKSKQTESKIALEGIESEKLELNLAIDKNCLNLVTDEEISKLTCEVENI
KIKNLHAMKSEAVKVERNAELKQSEAKSLDVSQSVQKCVNETNQPKGSQQGSSNTREDGD
DEEAATSLQRETRPTTLSEYLSDNLQALTAGEMFAVVPLQDCPHLFTVNEVPPGGIDVTA
PCVECASTAENWICLQCYTVHCARSVNQHAMQHAEEYEHPLTLSFSDISVWCYGCEAYID
NPRLYAARNAAHQSKFNEELPWTYSESSTNTP
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgactgactctacagtaaacctggatctgttcactgctgctaaacaattggcagacagc
gagatcgagctgataaaagtgattgagaattccagcaagtgccaaagaactgccgcaaac
atgttcacgaatgcgaagaaaacgaagaagtctgggaaatcaaaaaatgctcgtccatcc
gcagcgttattggctgccaagcaagaggcagcgaaacgacagctgtccgacaagaaatct
aacacctttataccagatatgtatcagaggtcgatcgatgcgtataaaacagtacgaaag
gagactggcctcgtgtttgaccggagcatggccgagcacgagtgcctctgggatcctaat
tatcccgaatgtccagccagatttacacgagttttgcagagatgcgagaagctgggcctg
gtgcagagatgtaaactcgtcgaaccgagacatgccacagagaacgagctcctaactaag
cacagtcagaagcagattgatattttaaaggcgacggacggctctacggatactgagaat
ttggagttggtgtcgtccaagtacgattgtgtctttatccacccgtctacgtatagattg
tctttactagccgtgggctcaacgatcaatcttgtagaaagtatctgtaaaaacgagata
caaaatggcatggctattatcagaccgcctggtcatcatgcaatgaaatcagaatactgt
ggttactgcttttttaacaatgtagctttggcagcagagaaagctttgagttctggtctg
gcgaataggattttaattgtggattgggatgttcatcatgggcaagcgacgcaacaaatg
ttttacaatgacccacgtgtagtttacttttcgatacatcgttacgaatatggcgagttc
tggcccaacttgagggaatctgattttcattatgttggagaggacctcggagagggttac
aactttaatatacctttaaataaaaccggcatgactaatgccgattacattgcaatattc
cagcaagttttattgccaatggcgtacgaatttcaaccggatttgataatagtatcagct
ggttacgatgcagctctaggttgtccagagggtgaaatgctgataactccggcatgttat
tcgcatttactatcgtcattattaagtctggcaaatggaaaagtcgccgtggttttagag
ggcggttattgtctgaaatcattagcggaaagtgcagcattgactttaagaactttatta
ggcgatccatgcccgattttgcaaacacttgatttaccatcattgagcatacgtgatact
atcctgaatgcgatttacgcacataaaccatactggaaatgttatcaataccaagacaca
cacagcatcaatagtgtaacgcacaataaagaggagattgctaaccggcatgtagttatg
gttacgtacaaaggtagtgaagttaaactagacaagtatgacactcgaaattgctatcct
atacaaagcaaagaaacattagaagctgtggaaaaaaagttgaacaatttaatactatta
acaaacttacgtaaagcacctcatagagtatgtatcgtctacgatgaaaagatgcagagg
cataccaacatttccgacagttctcatccagaacaaccaagtcgcatttccagtatttat
aagaatcacgaagaacatggcttattagaacgatgccatttattacaaggaaggagtgca
acaatagaagaattatctttggtccattcaaaagactacatagacgacataaaaaagacg
tcgattttaaagctcaaggaattacaaaagcaagcctcggattacaactccgtttatctt
catactgaaacgtggtcaagcgcctgtatatcaaccggctctcttttacaagtagtggac
gcggttttaaatggggagtgccaatccggagtggctattgtaaggccgcctggacaccat
gctgaaaaagatattgcatgtggtttttgtatatttaataatattgctgtggccgcgatg
tacgctgtacaatttcatcatgttaagagggtattaatagtggattgggatgttcaccat
ggaaatgggacgcaatctatttttgaggaagatccaaaggttctttacgtttccgttcat
cgttatgataatgggagcttcttcccaaattccaagctcgctaattatacgagcgttggt
ttaaatgcaggcgagggattcaacgtgaacataccgtggaacaaaaagggaatgggagat
gctgaatacgtagcggctttccagcaagttgtgatgcccatcgcttatcaatttaatcca
gaactagtcctagtttcggctggatttgatgcttgcaatggtgatacacttggaggttgt
ctcgtaaccccagaactctacggtcatttaacccatgcgctctcatccctggccaacggt
cgtgtaattctaagtctcgaaggaggttacaacatcaactccatctcccatgcgatgact
atgtgtaccaaggccctcctgggcgatcctttgccaatgctggatcctaatctcgttccc
tgcacaagcgcaatcaattctatcaataacgtattaaaaactcacaagaaattctggccc
aatttgcaatatggaatgtccttgccgaaagagaaactacttcctaaagttaaggcaata
cctaataagctcgaggagcaaggaagaaacgcggataaatcgaaacaaacggaatcgaaa
atcgccttggagggaatcgagagcgagaagctggagttgaatctggcgatcgacaagaac
tgcttgaatctagtgacggacgaggagatttctaagctaacatgcgaggtggagaatatt
aagattaaaaatttgcacgcgatgaaaagcgaagcggtcaaggtggaaagaaatgccgag
ttgaagcagagcgaagcgaaaagtctcgatgtttcacaaagtgtacaaaaatgcgtgaac
gaaacgaaccaaccaaaaggcagccagcaaggaagttctaacacacgcgaggatggcgat
gacgaagaagcggcaacatctctacagcgtgagacccggccgacaactctttcggaatat
ctttctgataatcttcaggctctgacggcgggagaaatgtttgcggtcgtgcctctgcaa
gactgtccacatctgttcacggtcaacgaagttcctccgggtggaatcgatgtaactgct
ccgtgtgtcgaatgtgccagcaccgcagagaattggatttgcttgcagtgttacaccgtg
cattgcgcacgcagtgttaatcaacacgcgatgcagcacgcagaggagtacgagcatccc
ctcacgctcagcttcagcgatatctctgtctggtgttacggttgtgaagcttatatcgat
aatcctcgattatatgcggcaagaaacgcggctcatcaaagcaagttcaatgaagagctt
ccctggacttatagcgaaagtagcacaaacacaccttaa
DBGET
integrated database retrieval system
