Vollenhovia emeryi: 105561605
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Entry
105561605 CDS
T06016
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vem
Vollenhovia emeryi
Pathway
vem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105561605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vem03019
]
105561605
03041 Spliceosome [BR:
vem03041
]
105561605
03009 Ribosome biogenesis [BR:
vem03009
]
105561605
03016 Transfer RNA biogenesis [BR:
vem03016
]
105561605
Enzymes [BR:
vem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105561605
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105561605
Spliceosome [BR:
vem03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105561605
Complex C
U4/U6.U5 tri-SnRNP related factors
105561605
Ribosome biogenesis [BR:
vem03009
]
Eukaryotic type
Pre-60S particles
Helicases
105561605
Transfer RNA biogenesis [BR:
vem03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105561605
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
Death_3
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
105561605
NCBI-ProteinID:
XP_011867107
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MANFTDELFDVFDEHGDDEEIPEIPQKIEPEAGVKRQLDADDDKLAVKKLRHEPVLDDIN
IEEVACRIKVHTVEAVESCMHEIAIPPDQDYVPLEHSQGKRAKEYKFILDPFQKEAILCI
ENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFHEEFKDVGL
VTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETLI
LLPDNVHYVFLSATIPNARQFAEWVAHLHNQPCHVVSTDYRPTPLQHYIFPVGGDGIHLV
VDETGQFREENFNRAMAGLQNTGDAAKGDTKGRKGGLRATNSGQTNIFKMVKMIMERNFA
PVIIFSFSKKDCEVYAMQMAKLDLNTLEEKKLVDEVFNNAVDVLNDEDKKLPQVTNLLPL
LRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK
DFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVVGKAIVQGKPDPINSAFHLTY
NMVLNLLRVEEINPEYMLERSFFQFQNQAGIPVLYNKVKELSTAYNTVNVERYDEISSYH
DIREQLNRLSGQFQSFLTRPEYLLPFLQPGRLVKVKNDNETFDWGIVVNFKKKNPKNPVK
DKTVIVIDILLHLSKESKEGNPIPCREGEEGEIEVVPVMHNLISQISSLRLYYPKDLRPP
DNRKSVLKTIREVKKRFSDGPPLLNPITDMHIEDQAFKDVVKKIEALEARLYAHSLHKDP
NVNVLYEQFLHKEELATQLKQAKEEFKQAKSLLQMDELKCRKRVLRRMAYCTSADVIELK
GRVACELNGADELLMTEMIFNGLFNALSVPQMVALISCFVCDEKSNEMPKSTEELSGPLR
QMQDLARRIAKVSTEASLELDEDTYVDRFKPYLMDVIYAWCKGATFLQICKMTDIFEGSI
IRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattttaccgacgagttgttcgacgttttcgatgagcacggcgacgacgaggag
ataccggagattccacagaagatcgagccggaggcaggggtgaagagacaactcgacgcg
gacgatgacaagttggctgtcaaaaagttgcgacacgagcctgtcttggatgatatcaat
atagaggaggtggcgtgccgtataaaagtgcatacggtagaagctgtagaatcctgtatg
cacgagattgctatccctcccgatcaggattacgtacctttggagcacagtcagggcaag
cgggccaaggagtacaaatttatactcgatccatttcaaaaggaggcaattttatgcatc
gagaacaaccagtcggttcttgtctccgcgcacacgtcggctggcaaaaccgtcgttgcc
gaatatgcgatcgcgtgttcgctccgtgataagcagagagtaatatacactactccgatc
aaagcgctgagcaatcagaaatacagagaatttcatgaggaatttaaggatgttggttta
gtaacgggcgatgttactattaatccgacagcgagtgtactaattatgactactgagatt
ttgcgaaatatgctctacagaggttcagaggtgatgcgcgaggttggttgggtgattttc
gacgagattcattacatgcgcgacaaagagagaggcgtggtatgggaggagacgcttata
ctgttaccggacaatgtgcactacgtatttctttccgctactataccaaacgcacgacaa
ttcgccgagtgggtggcgcatttgcacaatcaaccctgccacgtggtgtcgacggactac
aggcctactccgctacaacattatatctttccagttggtggtgacggtatacatctggtt
gtcgacgagaccggtcagttcagagaggaaaattttaacagagccatggcaggcctgcag
aacacgggcgacgcggctaaaggcgacacgaaaggacgtaaaggtggtctacgcgctaca
aacagcggacaaacgaatatcttcaagatggtgaaaatgatcatggaaagaaacttcgcg
cccgtgataatcttcagcttttcgaaaaaagattgcgaggtttacgcgatgcaaatggcc
aagctggatttaaacacgttagaggagaaaaagctggtggatgaggtcttcaacaacgcg
gtagacgttctcaacgacgaggacaaaaagctaccgcaagttacaaacctgttgccgctt
ttgcggcgcggaataggaatccatcacggtggactcctgccaatactgaaggagacagtc
gagatattattcggcgagggtctgatcaaagcgcttttcgccaccgaaacatttgcaatg
ggcttaaatatgccagcacggacagtcctgtttacagcaccacgtaaattcgatggcaag
gacttccgttggatcacgtcgggtgaatatatccagatgtccggtcgcgccggcagaaga
ggtctcgacgacaaaggaattgtcatattgatgatagacgagcaagtgagtcccgtcgtt
ggtaaagccatcgttcaaggaaaaccggatccaatcaactccgcatttcacttgacctac
aatatggttcttaatcttttacgagtagaagagatcaatccagagtacatgttggaaaga
agcttcttccagtttcaaaatcaagctggtattccagttttgtacaataaggtgaaggaa
ttaagtaccgcttacaatactgtaaatgtagagaggtacgacgagatttcttcatatcat
gacatacgcgaacaactcaatcggctcagcgggcagtttcaatcgtttctaacacgaccg
gagtacttgcttccgtttctacagcctggaagattagtaaaagtgaaaaatgataacgaa
acgttcgattggggtatcgtagtgaattttaagaagaaaaatccgaaaaatcccgtaaag
gacaagactgttattgtcattgacattttacttcacttatcgaaagaatctaaagaaggc
aatccaattccatgtcgcgagggtgaagaaggcgaaatagaagtagttcctgttatgcat
aatttaatttcgcaaatcagttcactcagattatattatccaaaagaccttagaccgcct
gataataggaagagtgtactgaaaacgatacgagaagtgaaaaagagattctcagacggt
ccaccgttgcttaatcctattacagacatgcatatagaggaccaggcctttaaagatgtt
gtaaaaaaaattgaagcattagaggcgagattatatgcacattctttgcataaggacccc
aatgtaaatgtgttgtacgaacaatttttgcacaaggaagaattggctactcagctcaag
caagccaaggaggaattcaagcaggccaaatcgttacttcaaatggacgaactgaaatgt
aggaagcgagttttaaggagaatggcgtactgcacatcggcggacgttatagaattaaaa
ggacgtgtggcttgcgagttgaacggtgccgatgagctgttgatgaccgagatgattttt
aatggtctctttaatgctttgagcgtgccacaaatggtggcgttgatcagctgttttgta
tgcgacgagaagtcgaacgaaatgccgaaaagtacagaggaattaagcggcccgctcagg
cagatgcaagacttggctcgaagaatagcaaaggtatcgacagaggccagtctggaatta
gacgaggatacgtatgtcgacagatttaaaccgtatttaatggacgttatatacgcttgg
tgtaaaggcgcaacgttcttacaaatttgcaaaatgacagacatatttgaaggatctatc
atcaggtgtatgcgacgcttagaggaggtgcttcgacaattatgccaagctgcaaaggga
attggaaatacagacctagaaaataaatttagcgaggcgatcaaacttataaaacgggat
atcgtgtttgctgcgtccttatatttataa
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integrated database retrieval system
