Vollenhovia emeryi: 105562065
Help
Entry
105562065 CDS
T06016
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
vem
Vollenhovia emeryi
Pathway
vem04382
Cornified envelope formation
vem04512
ECM-receptor interaction
vem04518
Integrin signaling
vem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105562065
04518 Integrin signaling
105562065
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105562065
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105562065
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vem04147
]
105562065
00536 Glycosaminoglycan binding proteins [BR:
vem00536
]
105562065
Exosome [BR:
vem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105562065
Glycosaminoglycan binding proteins [BR:
vem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105562065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105562065
NCBI-ProteinID:
XP_011867962
LinkDB
All DBs
Position
Unknown
AA seq
1986 aa
AA seq
DB search
MTRLGLRFVASAVFLAGIVSGQYNHTSWNPPPVVPLNERGDIGGPVSAGDDDDDSPPGFK
DEDRDRFREFITDNEGYEDPERWNGSFTAGHYSPDDRTRQWSYYRNRSDPHGQVPSGRSP
YDRGPQDYDRYPESGGASGYGIDENRPGHPDGRGDYEAHSGAGENDRGGGSHNYGQGGSY
GGSYGGSYGAGGADSYGRGSGNVYGGGRGSGDPYGGGRGSGHVYGGGRGGDDAYGGSRGR
GHGGYGAAGDDENYPSNYQVVPMPGAPRNCTGSGCCVPKCFAEKGSRGPPGILGPQGPKG
QRGFPGAEGLLGPKGEKGDPGPQGPHGAKGDRGKMGMPGFPGINGVPGVQGSPGSPGLPG
RDGCNGTDGERGRDGVPGEPGPRGFRGGPGPKGEKGQPAYAGAFPVGQKGEPGNDGVRGP
PGPPGFQGERGPSGVKGERGPYGTSGLPGPKGEKGNMGLGFEGLKGDKGQKGESGPPGST
APIMPFQGASDVTGPRGEPGLKGDRGEMGPEGQKGEPGFIGDHGIPGGSGHKGEKGLPGA
PGIRGRDGFSGPPGPPGRKGDRGIDGLEGLSGRSGKKGESGRDGPMGVPGLRGPPGPPGG
GKGRPGPPGPKGPRGFPGPTGSRGTDGFPGDPGPRGPIGLQGGPGLSGIPGPEGLPGEKG
GKGEPGLTGFPGGPGPRGFDGPPGPAGPRGLPGDKGFSIMGPKGMDGSPGFDGEKGQKGE
RGYAGVRGRPGDSLDGIPGSPGAPGEAGEPGAPGRDGIPGLSGTPGDKGDIGGRCIDCLP
GFRGAKGDRGLDGIPGLTGPRGPPGERGFPGEPGVDGLPGAIGPPGLPGKDGIPGAPGPQ
GESGTPATVTWNMLKLEKGDKGARGESGRQGPPGPEGPVGEKGRPGFEGFPGLKGTPGDR
GFPGQDGVPGRPGTPGRRGDKGISIKGEPGEGGRPGSPGQKGEPGFYGIKGEPGECPPLD
LMKGFKGDRGLTGEKGEPGPPGRDGISGDKGLQGFSGPPGPVGPIGAPGPVGARGLPGPR
GDKGNMGPMGFPGESGREGPRGFPGAPAPKGDKGEPGISVKGSPGLTGPPGERGEKGLPG
PPGKEGLPGYQGLPGFVGEKGDVGAPGINGLPGAPGGKGDTGPIGPPGPPGVAGIPGADG
GKGEPGLLGEPGRSGLPGFPGSKGDRGEPGIDGPKGYPGRRGLPGTPGRPGIDGVSGLKG
EHGDKGSPGFPGLPGMEGKPGRPGISGLKGDQGLPGAPGLPGIVGYEGVKGDTGLPGPTG
RKGEPGQVSEKGQKGEPGMPGIRGPQGPPGRDGIDGSKGEAGRPGHGRDGLPGLKGDAGV
PGRDGAPGFQGQKGDTGVRGFPGIKGDYGPPGIHGEPGPPGIDGLPGEVGAIGSPGAPGF
PGLDGELGSPGRPGLDGVKGDRGQPGLVGLPGIIGALGEKGDRGPPGPTIQIKGEKGEPG
IPGFSGEKGEKGDQGLIGIAGYDGEKGDRGSGGTEGSPGPHGAPGLKGEQGPPGIPGAPG
VTIKGEKGLPGLMGKHGRDGFSGRPGEKGEPGLPGLPGPKGDIGPYGPVGPQGEKGDQGV
LGITGAPGRDGTPGLEGVPGLPGERGPKGDQGPPGLFGAPGLKGETGHPGANGLDGPQGE
KGERGWDGVNGLPGPLGEKGDRGYPGPVGLMGTVGYAGHKGEKGEDCLEPPMGPKGDRGY
PGPAGPSGPPGEKGLSGPPGFPGLDGIKGAQGFIGPAGPPGLPGLPGPVGASGLPGLQGP
VGAPGLTGEPGAPCETTPDYLTGILLVKHSQSQSTPICEPGHIRLWEGYSLLYTDGDERA
HSQDLGYAGSCVRKFSTIPFLFCDVNNVCHYASRNDRSYWLSTNSPIPMMPVEETAIEEY
ISRCVVCEVPANVIAVHSQAISIPECPAGWTGLWIGYSFVMHTGAGSQGGGQSLSSPGSC
LEDFRATPFIECNGAKGHCHYYSNQYSFWMVTIEENQQFRSPEKQTLKAGNLRSRISRCQ
VCIKNT
NT seq
5961 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttgggattgcgattcgtcgcatccgcagttttcctggccgggattgttagt
gggcaatataatcacacatcatggaatccaccgccggtcgtgccactgaacgaacgaggt
gatatcggagggcctgtaagcgctggcgatgacgacgacgacagtccgcccggattcaaa
gatgaagacagggatagatttagagagtttatcacggacaacgaaggatacgaggatccg
gaaaggtggaacggcagtttcacggctggccattacagtcccgacgacaggactcggcag
tggagctactatagaaacaggagcgatcctcacggtcaagtgccctcgggccgatctcct
tacgatcgaggaccgcaggactacgaccggtatcctgaaagtggcggcgcgtcgggatac
ggaattgacgaaaatcgaccaggtcatcccgatggtcgcggcgattacgaggcacacagc
ggcgccggcgaaaacgaccgaggaggaggatctcataattacggccaaggaggttcttat
ggcggtagttacggcggaagttacggcgcgggaggcgcggattcctatggccgtggaagc
ggaaatgtttatggtggcggtcgtggaagcggagacccttacggtggcggccgcggaagt
gggcacgtttacggtggcggtcgtggaggcgacgatgcttacggtggcagtcgcgggcgc
ggtcatggtggttacggtgccgctggagacgacgagaattatccgagcaattaccaggtg
gtaccgatgcccggggcaccgcgaaactgcactggatcgggatgctgcgtacccaagtgt
ttcgccgagaagggatcgcggggaccaccgggaatactcggaccgcaaggtcctaaggga
cagcggggatttccaggagcggaaggtcttctaggacccaaaggtgagaagggagacccc
ggcccacaaggtccgcacggtgcgaaaggtgacagaggaaaaatgggtatgcctggtttt
cctggtataaacggtgtgcctggagtacaaggatctccgggttctccaggcttgcccggt
cgtgacggttgcaacggaacggacggtgaacgtggacgtgacggcgtacccggagaacca
ggacctcgaggttttcgaggtgggcctgggcctaaaggagaaaagggccagccagcgtat
gccggcgctttcccggtgggtcaaaagggtgaacctggtaacgacggtgtcagagggcct
cccggccctcccggttttcagggagagcgtggcccgtctggcgtgaagggtgaacgaggt
ccctacggcacctcgggcttaccgggtccgaaaggagaaaaaggaaacatgggtctcgga
ttcgaaggattaaagggtgataaaggtcagaagggtgaatcgggacctccgggctcgacc
gcgcccattatgccattccaaggagcctcggacgtaacgggtccgcgcggtgaaccaggc
ctaaaaggagataggggtgaaatgggaccggaaggacaaaaaggagaaccaggattcata
ggcgatcatggtatacccggtggatcaggacacaaaggagagaaaggtcttccaggagct
ccaggcattcgtggtagagatggtttctctgggcctcctggacctcctggacgaaaaggt
gatcgaggtattgacggattggaaggcctttctgggcgatccggcaagaaaggagaatcc
ggtcgagacggaccgatgggagttccaggtttacgaggacctcctggaccaccggggggt
ggtaaaggaagaccgggaccgccaggcccgaaaggaccacgtggttttccaggacccacc
gggtcacgaggaacagacggttttccaggagacccaggaccaagaggccccattggttta
caaggaggtcccggattgtctggaattccaggcccagaaggtttgccaggggaaaaaggt
ggaaaaggtgaacccggtttgaccggattccctggaggtccaggaccacgtggatttgat
ggaccaccaggaccggctggaccgagagggctgccaggagataaaggattctcaataatg
ggaccgaaaggcatggatggatcgcctggcttcgatggagagaaaggacaaaagggcgaa
cgaggttacgcgggtgtccgaggtcgaccgggagactctctagacggtatcccaggatca
ccgggtgcacccggtgaggccggggaacccggagcgccaggaagagacggcataccaggc
ctttctgggacgcctggagataaaggagatatcggcggtcgctgtatagattgtttacct
ggttttcgaggcgccaaaggtgatcgtggtttggatggtatacccggacttaccggaccc
cgaggaccacccggagaacgcggtttcccgggtgaacctggagtggacggtttgccaggc
gcaatcggacctccgggactgccaggaaaagatggtatacccggtgctccaggacctcaa
ggagaatccggaaccccggcaacagtgacatggaacatgctcaaactggaaaaaggtgac
aaaggagcgcgtggagagtctggtcgacaaggtccgccgggaccggaaggaccggtggga
gagaagggtagacctggattcgaaggtttcccagggctcaaaggaacgccaggagatcgc
ggcttcccagggcaagatggcgttcccggaagacctggtacacctggacgcaggggagac
aaagggataagtataaaaggtgaaccgggagaaggaggtcgtccgggatctccaggacag
aaaggagaacctggattttacggaattaagggtgaacctggtgaatgtccgccacttgac
ctcatgaaaggcttcaaaggtgatcgaggcctgacaggtgagaagggagaacctggacca
cctggcagggatggaatatcgggtgataaaggattgcaaggcttctcgggtccacccggt
ccagttggtccaatcggtgctcctggacctgttggtgcaagaggtttacctggcccgcgc
ggagacaagggtaacatgggtcctatgggtttcccaggagagtctggtcgcgaaggacct
agaggcttcccaggtgctccggctccgaagggtgataagggagaaccgggaatatcggtt
aaaggtagtcctggtttaacaggacctccaggtgagagaggagagaaaggtcttcccggg
ccaccagggaaagaaggtctgcccggttatcagggattaccaggctttgttggcgagaag
ggagacgttggcgcaccgggaataaatggtttgccaggggcacctggtgggaaaggagac
acaggtccaattggtccacctggtcctccaggtgttgctggtatcccaggagcggatgga
ggcaaaggcgagccaggattactaggagaaccaggtagatcgggcctcccaggtttcccg
ggatcgaaaggtgatcgcggcgaaccaggtattgatggaccgaaaggataccccggcaga
cgaggattacctggaactccaggtagacctggaatcgatggcgtatcaggtctaaaggga
gaacacggtgacaaaggctcaccgggattccctggattgccaggtatggaaggaaagccc
ggtcgtcctggtatatccgggctaaaaggtgaccaaggactacctggcgcgcctggttta
ccaggaatcgtcggttatgaaggagttaagggcgacactggactgccgggtccaacggga
aggaaaggagagccagggcaagtctcggaaaaaggacagaaaggcgagccaggaatgcct
ggaatacggggtcctcagggtccgccgggacgagacggtattgatggatcgaagggcgaa
gctggcagaccaggccatgggcgtgacggattacctggattaaagggcgacgcgggtgta
ccgggtcgggacggagcgccaggattccaaggccaaaagggtgataccggtgtacgagga
ttccccggaataaaaggcgactacggtccaccgggtatacacggagaaccgggtccgccg
ggcatagatggacttcctggagaagttggtgcaatcgggtcgcccggagcacctggtttc
ccgggacttgatggcgaacttggttctcctggtcgacctggactcgatggtgttaaagga
gatcgcggtcagccaggactcgtcggattgcctggaatcattggagcactaggagaaaaa
ggagatcgtggtccgccgggacctacgatccaaatcaagggtgagaaaggcgaaccaggt
atacctggattttctggagaaaagggagagaaaggagatcaaggtctgataggtatcgct
ggttatgatggcgaaaagggtgacagaggctcaggtggaaccgaaggatctcctggacct
cacggtgctccgggacttaagggcgaacaaggacctcctggtattcccggagctcctgga
gttacaataaagggtgaaaaaggtttgccaggtctaatgggtaagcacggcagggacgga
ttttcaggacgacccggtgagaagggcgaaccaggattacctggtttgcctggaccaaag
ggagacattggtccttacggaccagttggaccgcaaggtgagaaaggtgatcaaggagta
ctgggtataactggagcaccaggacgtgacggaaccccaggtctcgaaggtgtaccagga
ttacctggtgagagaggtccgaagggtgaccaaggaccgcctggattatttggtgcccca
ggattaaagggagaaaccggtcatccaggagcaaatggattagacggaccccaaggagaa
aagggtgaaagaggttgggacggtgtaaatggtctacctggaccacttggcgagaagggt
gatagaggatatcctggtccagtcggattaatgggtaccgttggctacgcaggtcataaa
ggagaaaagggtgaagattgtctcgagccgccaatgggacctaaaggagatcgcggatat
cctggcccggctggaccgtctggtccaccaggagagaaaggactgtcgggtccgcccggt
ttccccggcttagacggtattaaaggcgcccaaggtttcatcggtccagcaggacctcct
gggctaccaggattgcccggacctgtcggcgcgtccggcctaccgggtcttcagggtcct
gtcggtgcgccaggactcactggcgagcccggtgcgccctgcgaaacgacacctgattat
ctcaccggtattcttctggtcaagcacagccaaagtcaaagcaccccgatttgcgagccg
ggtcacatcagactctgggagggatacagtttgctctacaccgatggcgacgagagagcg
cactctcaagacttaggttatgccggctcgtgtgtaagaaaattctccacgatacccttc
ctgttctgcgacgtcaacaacgtctgccattacgctagtcgcaatgatcggtcttactgg
ctgtctaccaatagcccaattcccatgatgccagtcgaggagacggcaatagaagaatat
atctccaggtgcgtggtgtgcgaagttccggctaatgtgatagcggtacacagtcaagcg
ataagcattccagaatgtccagcgggatggaccggtctttggatcggttatagttttgta
atgcacaccggcgcaggctcccaaggcggcggccagtccctgtcgagtcccggttcctgc
ctggaggacttccgcgccacacctttcatcgagtgcaacggcgccaaaggacactgccat
tactattctaatcagtacagcttctggatggtgaccatagaggaaaaccagcagttcagg
agccccgagaaacagaccttaaaggcgggtaatcttagatcccgaataagtcgctgccaa
gtttgtataaagaatacgtaa
DBGET
integrated database retrieval system
