Vollenhovia emeryi: 105562066
Help
Entry
105562066 CDS
T06016
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
vem
Vollenhovia emeryi
Pathway
vem04382
Cornified envelope formation
vem04512
ECM-receptor interaction
vem04518
Integrin signaling
vem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105562066
04518 Integrin signaling
105562066
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105562066
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105562066
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vem04147
]
105562066
00536 Glycosaminoglycan binding proteins [BR:
vem00536
]
105562066
Exosome [BR:
vem04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105562066
Glycosaminoglycan binding proteins [BR:
vem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105562066
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105562066
NCBI-ProteinID:
XP_011867964
LinkDB
All DBs
Position
Unknown
AA seq
1842 aa
AA seq
DB search
MRPRAAATSRIIGDASRGISRPVPLVLRFTCVLALLVHAATWIPIAEAVICKDSYKCDCT
GIKGQPGFPGIPGPHGTEGLPGDIGPDGPLGPKGEKGAAGEHGGTGEKGYRGDDGIQGFV
GAAGLSGNPGVPGVMGPDGLDGCNGTDGRAGAPGIPGVFGPRGPQGPTGEFGYSGEPGDG
GINSVGAKGIRGNPGIDGLEGYRGQQGLTGEMGYPGETGDFGLPGSPGVPGTQGDRGDAV
YGVQGQLGEQGDRGEPGAPGKDEYKKPENSTAIKGPQGPKGMKGFYGDRGRKGEMGAKGP
QGRPGFLGVKGVKGEQGDDGPRGKQGIGGPPGPAGEKGEKGAPGFAGLPGQDGEDGEPGE
EGNRGPPGKQGAEGEIGQYIPELDEIIAGNIGIQGDLGPPGEPGGSGIPGLQGKVGFIGP
PGPPGLPGTPGLAGVKGSSIKGEQGDDGLPGPMGHQGSSGLPGLPGITGAKGFPGVTITG
PPGLDGHPGLPGLLGPPGDRGDPGPPGEKGFPGKGIRIRGPAGERGLPGTPGIPGPDGWP
GLTGSKGLKGIHGDDCGVCAPGLPGDKGERGESGLDGYPGASGFPGLPGPRGLKGIQGKR
GPQGPFGLEGDSGRPGIAGVQGPKGEHGRVFFPPGEKFVSPPGDIGEKGLPGHEGLRGLR
GQPGPIGDTGVPGPKGDKGEHGSPGLSGRDGSPGWDGIPGEKGEDASIAIEFLRGEPGFP
GVTGIKGVSGDKGLKGEPGTSAEYVTDVQGEKGFKGERGAPGEFGYKGFQGRSGDEGLPG
FPGEPGSPGLSLQGPGGLKGYPGMPGEQGPRGTPGSPGLQGPVGFSGRIGNKGERGDPGS
NLTYGEIGERGWYGPKGDVGDAGPQGFSGRPGEDGLKGGKGAKGAPGYEGLPGLEGAKGQ
HGDSIQGDRGFPGIPGQPGMPGRIGDVGNRGPDGPSGFDGMKGLKGEIGFIGRRGDDGDI
GPQGYQGMHGVQGLPGAPGDKGDIGESGEPGPLGWPGLEGIDGMHGPKGEMGEVGLPGLR
GAEGSPGFKGITGDTGLEGLAGIPGENSFSGPQGDVGAPGFMGELGPPGLTGFDGRPGLP
GEPGLATDGFNGLQGQKGEPGFDGYDGVGGPKGEIGDMGPDGLKGERGEQGFPGRPGAPG
VSGRYGAKGERGPIGPPGFEGLKGKAGLDGDPGIMGRPGMPGEPGVRGIQGIIGAPGSKG
YVGEPGLPSYAFAAKGDFGNRGHDGFVGMKGQSGEPGYIGMPGRKGQTGDRGYPGPGGFP
GLPGFPGLVGDQGPRGAPGLPGEFAEPGEPGRAGLDGVAGTPGHAGQKGAPGEYGPNGPK
GISGDIGPSFRGSKGMVGEPGLRGFVGVPGMPGLEGLQGFPGALGPKGYRGEPGISAGSK
QGQPGEPGWPGLDGRIGPKGMKGDAGLAGFDGLPGPKGERGDTGEPGLRGLPGPEGPQGP
KGVPGINPFPPFPRRGPPGDTGVPGLPGFPGLQGMMGEPGKDGLPGRQGETGILGIPGSR
GPEGKDGPPGYQGPPGATGRQGQPGFRGAPGIPAPNGIGPRDRGFYFARHSQSEMIPTCP
RNTVKIWEGFSLLHTMGNGRPYAQDLGAAGSCIKKFSTMPFLFCNLNNVCDYANRNDYSY
WLSTTEPMPMMMTPIPAPEVGRYISRCSVCEAPTRVIAVHSQSMTIPECPGGWDEIWVGY
SFLMHRDAGADGGGQSLVSPGSCLEEFRVRPFIECRGLGTCNYFATATSYWLATIRDDEM
FRRPLQQTLKADHTSRVSRCTVCLRRRVTEVLKPFTSNNERVPNNWGIAPPAPPPPPRNL
PDYESRVPPGRPRYAPHRRVPYQHRRRSRVRGKQATESSNNL
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccagggccgcggcgacgtcaagaatcatcggcgacgcgagccgcggcatctcg
cggccggtcccgctcgtcctgcgattcacctgcgtccttgccctactggtgcacgccgcc
acgtggataccgatcgccgaggctgtgatctgcaaagactcgtacaaatgcgattgcacg
gggataaaaggacagccaggatttcctggaatacctggacctcacggaacggagggactc
ccaggtgacattggaccggacggacccctcggacccaaaggcgagaaaggagcggcgggg
gaacatggaggcaccggagaaaagggctaccggggcgatgatggtatacaaggatttgtg
ggagccgcaggactttccggtaatcctggtgtacccggtgtgatgggtccagacggactg
gacgggtgcaacggaaccgacggccgtgccggcgcacccggcatacccggggttttcggg
ccccgcggaccgcaaggaccgacaggcgagtttggttattcgggggagcctggtgacgga
ggcataaattcggttggcgccaaaggaattcgcgggaaccccggcatcgatggattggag
ggttatcgagggcagcaggggctcaccggcgagatgggttatccaggagagacgggcgac
tttggtttgccaggttctcctggcgtgccgggtacgcaaggtgatcgcggcgacgccgtg
tacggtgtgcagggtcaacttggtgaacagggagacaggggagagcccggggcaccgggt
aaggacgaatataagaagccggaaaactcgacggccatcaaaggaccgcaagggccaaaa
ggcatgaagggcttctacggcgatcgaggtcgcaagggtgagatgggcgccaagggtcca
cagggtcgaccaggtttcttgggtgtcaagggtgtgaaaggtgaacaaggtgacgatgga
ccaagaggtaagcagggtatcgggggcccgccgggcccggccggtgagaagggagagaaa
ggagctccaggattcgctggactgcctggtcaggatggagaagatggagaaccaggagaa
gaaggaaatcgtggtccacctggtaaacaaggagctgagggagaaattggacagtacatt
ccagaactcgatgagataatcgccggaaatatcgggattcaaggggatctcggtccccct
ggtgaaccaggcggatcgggaataccgggtctgcaaggaaaggtcggctttataggaccg
ccaggaccaccaggactcccgggtactcctggtctggcgggagtgaagggttcgtccata
aaaggagaacaaggagatgatggcttaccgggacctatggggcatcaagggtcttccgga
ctacccggtttacctggaattacgggagccaaaggatttccgggggtaacgataactgga
ccgccagggctagacggccatccaggtctcccgggattgttgggcccacctggcgatcgc
ggtgatcctggtcctccaggagagaaaggttttcctgggaaaggaataagaattcgtggg
ccagctggagaacggggtctgcccggaacacctggtattcctggtcctgacggctggcct
ggtcttaccgggtctaagggtctcaagggtattcatggagacgactgtggcgtatgtgcc
ccaggtctgccgggggataaaggagaacgcggtgaatctggcttggacggatatcctgga
gcctcgggattccctggtctacccggtccacggggacttaagggtatacaaggcaagcga
ggtccgcaaggaccatttggacttgagggcgatagcggtagacctggtattgcgggagtt
caagggcctaaaggagaacatggaagagtattcttcccgccaggcgagaagttcgtgagc
ccgccgggcgatatcggtgagaaaggtttacctggccacgaggggctcaggggtctgcga
ggacaaccagggcccattggtgatacaggcgtaccaggaccgaaaggagacaagggtgaa
catggttctcctggattgtcgggaagagacggttcgccaggatgggatggcattcctggt
gaaaaaggtgaagacgcctcgatagcaattgagttcttgcgtggagagccaggatttccg
ggagtgacgggaatcaaaggagtatcaggagataagggcctcaaaggagaacctggtact
tccgcggaatatgttactgacgtacagggtgaaaagggtttcaaaggtgaaagaggagct
cctggtgaattcggttacaaaggtttccaaggacgttctggcgacgaaggtctaccagga
ttccctggtgagcctggttctccaggactttcgcttcaaggtcctggcggattgaaagga
tatcctggtatgcctggagagcaggggcctcgaggcacaccaggctcacctggattacag
gggccagtaggtttttcgggtcgcatcggcaacaagggcgaacgaggagatccaggctca
aacttaacatatggcgaaattggagaacgcggatggtacggtccaaagggtgacgtcggt
gatgctggtccacagggattctctggccgaccgggagaggatggtctaaagggcggcaag
ggcgccaagggagcgcctggttacgaaggattgcctggacttgaaggagccaaaggtcaa
catggagacagtatacaaggtgatcgcggatttccgggaattcctggccagcctggaatg
cccggaagaatcggtgatgtcggaaaccgcggaccggacggtccttccggttttgacgga
atgaagggcttgaaaggagaaatcggttttatcggacgacgtggtgacgacggcgacata
ggacctcagggataccaagggatgcacggcgtgcaaggtctaccgggtgctccaggggac
aaaggagatatcggcgagagtggcgagccggggccactcggttggcctggtttggaaggt
atagacgggatgcacggtcctaaaggagagatgggagaggtaggactccctggtttacga
ggagcggaaggatcacctggatttaaaggtatcaccggtgatactggtctcgagggatta
gcgggaatccctggcgaaaactccttcagcggtcctcaaggtgacgtgggtgcacctggt
tttatgggagaacttggaccgcccggtctgactggattcgacggacggccgggtttaccg
ggagaaccgggattagccactgacggtttcaatggcctgcaaggacagaaaggtgaaccc
ggcttcgatggatacgacggtgttggtggaccaaagggagaaattggtgacatgggtcct
gatggattaaaaggtgaacgtggtgagcaaggtttcccgggacgaccaggcgcgcctgga
gtatctggtagatatggtgcgaaaggtgaaagaggtccgattgggccacccggatttgaa
ggtttgaaaggaaaggctggtcttgatggtgatccaggtataatgggcagaccaggaatg
cctggtgagcctggtgtgaggggaattcagggcattataggtgctcctggatcaaagggt
tacgtaggcgaacctggtttgccgtcttacgcgttcgcggcgaagggcgatttcggtaat
cgtggccacgatggtttcgtcggcatgaaaggacaatcaggcgagccaggatatatcggc
atgcctggccgtaagggtcaaacgggagacagaggatatccgggtcctggtggttttcca
ggattacctggtttccctggtctggtgggtgatcaaggacctcgcggagctccaggactg
cccggtgaatttgctgaacctggtgagcctggtcgcgccggtctcgatggtgtggctggt
actccagggcatgcaggacagaaaggagcgcctggtgaatatggcccgaacggacctaaa
ggaatctctggcgatataggccccagcttccgtggttctaaaggaatggtcggagaacca
ggtctgcgaggattcgtcggcgtaccaggtatgccaggtttagaaggattgcaaggtttt
cccggagcactggggccgaaaggctaccgtggagaaccgggaatatctgcgggcagcaaa
caaggacaacccggcgaacctggatggcctggactcgatggtcgaattggaccgaaggga
atgaaaggtgacgctggtctagctggctttgacggattgccaggaccgaaaggagaaagg
ggagataccggtgaacctggtctgcgtgggttgcctggtcctgaagggccacagggaccg
aaaggagtacctggcataaatcctttcccgccattcccgagacgaggaccccctggtgac
acaggagtgcccggattaccaggtttccctggactacagggaatgatgggtgagcctggc
aaggacggtctaccaggacgacagggtgaaacaggaatacttggaattcctgggtcgcga
ggaccggaaggtaaagacggcccccctggatatcaaggacctcccggagcaactggacga
caaggacaaccaggtttccgtggcgcacctggaatacctgcgccgaacggaattggtccg
agggacagaggattctacttcgcacgtcattcgcaatccgaaatgataccaacctgcccg
aggaataccgtgaagatctgggaaggattttcgctattgcacacgatgggtaatggacga
ccctacgcgcaggatcttggtgctgctggcagttgcattaagaagttctccactatgccc
ttcctgttctgcaatctgaacaacgtgtgcgattacgcgaatcgtaacgactacagttac
tggctcagcacaaccgagcctatgccgatgatgatgacaccaataccggctccggaagtc
ggtagatacatatcgagatgttctgtgtgcgaagcaccgactagggtaatagctgttcac
agtcaatccatgacaatacccgaatgcccgggtggttgggatgaaatctgggttggatac
agtttcctcatgcacagagatgcaggcgcggacggcggcggccagtccctagtctcgccc
ggttcctgcttggaggagttccgcgtcaggccgtttatcgagtgccgcggcctcggcact
tgcaactacttcgccacggcgacgtcgtactggctagcgaccattcgcgacgacgagatg
ttccgcaggccgctgcagcagacgctcaaggccgaccacacgtcccgggtgagccgctgc
accgtgtgcctccgccgacgggtcaccgaggtcctgaagcccttcacgtccaacaacgag
cgggtccccaataactggggcatcgccccgccggcaccgccgccgccacctcgtaatcta
cccgattacgagtccagggtgccgcctggtcggccaagatatgcccctcatagacgcgtg
ccctatcaacaccgcaggagaagccgcgtgcgcggcaaacaagccacggagtcctccaac
aacctgtag
DBGET
integrated database retrieval system
