Vollenhovia emeryi: 105563316
Help
Entry
105563316 CDS
T06016
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
vem
Vollenhovia emeryi
Pathway
vem03022
Basal transcription factors
vem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105563316
09124 Replication and repair
03420 Nucleotide excision repair
105563316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vem03021
]
105563316
03400 DNA repair and recombination proteins [BR:
vem03400
]
105563316
Transcription machinery [BR:
vem03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105563316
DNA repair and recombination proteins [BR:
vem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105563316
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
PH_SLA1
Voldacs
Motif
Other DBs
NCBI-GeneID:
105563316
NCBI-ProteinID:
XP_011870208
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MTTSSEDVLMQVGQVRFKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISPEGK
SKIQLQVVLHDGTSSTFHFVNKNGSEAQIKDRDDVKELLQQLLPKFKRKVNKELEEKNRT
LQEHPMLLQLYRDLVITQVISSEEFWLQHAAEYTQAKKIQRQEIGVNSAFLADIKPQTDG
CNGLKYNLTVDVIECIFKTYPAVKRKHQENVPHKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDLQTGINDPLVDITSFEDQSLDENYGSGCSKSDKTSGNIVHQNM
IKRFNQHSIMVMKASTAKQSMQTNQPQLNGSTPSASKVTNNELDDGPKTKKRRIQEKITY
DDLDQSCDVTTNNGAPLNLTHIDRYLHGPVPGYGNIEPTSEELFITLSHLKKEASGWIAG
STLPRQATTSLVSPAAAVSALGELTPGGSLMKGFREESLGQLIPKDLEKELRNVYVCACE
LLKHFWRSFPPTTPQLEEKAIRTHEALHRFHSAKLKPFEDRVQREFSAVSQHLTSHLNQL
LNTAYRKFAVWQQRKMQMR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgactacgtcctcggaagatgtcctgatgcaagtgggtcaagtgcgtttcaaaaaggga
gatggtactttatatgtgatgaacgaacggatagcgtggatgctcgataacagggacact
gtgtctgtgagccataaatatgctgatattaagttgcaaaagatatctccggagggaaaa
tcaaaaatacagctgcaggtggtgttacacgacggtacgtcgtccacatttcacttcgta
aataaaaatggatcagaagcacagattaaagatcgcgacgatgtgaaggagttgttgcaa
cagttactaccgaaattcaagcggaaagttaataaggaattggaagaaaagaatagaacc
cttcaagaacatcccatgttgcttcaattatatcgcgatctggtaatcacgcaagtgata
tcgtctgaagaattttggttgcaacatgctgcagaatatacgcaagctaagaagattcaa
cgtcaagagataggtgttaatagcgcttttctggcggacattaaaccacaaaccgacggt
tgcaatggattaaaatacaatttaactgtcgatgtgatagaatgtatatttaagacttac
ccagctgttaaaaggaaacatcaagaaaatgtgcctcataaaatgtcagagtctgatttc
tggacgaaattctttcaatcacattattttcacagagaccgtatcaatgctgggaccaag
gatctttttaccgaatgtgccaaaatagatgatcaagaacttaagaaagaccttcaaact
gggataaatgatcctttggtagacattacctcctttgaggatcaatcactggatgaaaat
tacggaagcggatgtagtaaatcagacaaaacatcaggaaatattgtacatcaaaatatg
atcaagagatttaatcaacatagcataatggttatgaaagccagcactgccaaacagtcg
atgcaaaccaatcaaccacaattaaatggatctacaccatctgcgagtaaagtaacaaat
aacgaactggatgatggaccaaagactaaaaaacgtagaatacaagagaagataacttac
gatgatcttgaccagagctgtgacgtaactacaaataatggagcaccgttaaatctgacg
catatagatagatatctgcacggacctgtaccaggatatggaaatatagaaccaacctcg
gaagaattattcattacattaagtcatttaaagaaagaagcttctggatggatagccggt
agtacgttaccgcggcaagcaacgacttctttagttagtccggccgcagcggtgtcagct
ttgggtgaattgacacccggcggatccttaatgaaaggtttccgagaagaaagccttgga
cagttaataccgaaggatttagagaaagaattacgtaacgtatacgtgtgcgcgtgtgag
ctattgaagcacttttggcgaagttttcctccgacaacaccacaacttgaagaaaaagcg
atcagaacgcatgaagctttacacagatttcattccgctaaactaaaaccgtttgaggat
cgtgtgcaaagagaattttctgcagttagtcagcacttgacgagtcatctcaatcaattg
ttaaataccgcgtataggaagtttgcagtatggcaacagcgaaagatgcaaatgaggtag
DBGET
integrated database retrieval system
