Vollenhovia emeryi: 105563369
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Entry
105563369 CDS
T06016
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
vem
Vollenhovia emeryi
Pathway
vem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105563369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vem03041
]
105563369
Enzymes [BR:
vem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105563369
Spliceosome [BR:
vem03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105563369
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
SLFN-g3_helicase
Flavi_DEAD
Cas3-like_C_2
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
105563369
NCBI-ProteinID:
XP_011870308
LinkDB
All DBs
Position
Unknown
AA seq
887 aa
AA seq
DB search
MSKYRREETSSEDTDSEEERRKKDIKERDSFANRLKEKDESKRRNVAMPAGSGAAEAAKR
LKIMETDTKDKLIPKLRVESRRKYLEKRKEDKVAELEADILDDEYLFDENILTDKEKQER
AHKKQLLHLAKEHEKARELERMQRYHMPLEKGKTEQELDTTTDKEPPQSEQSKWESDQMS
SAVFRFGAKDRKAQQEYNLLMEDEMIEFVQVLHMPGHKDKKREESPPAHVKSLQTIQETK
KSLPIYPFRKDLIRAIRDHQVLIIEGETGSGKTTQIPQYLYESGFADDGKIIGCTQPRRV
AAMSVAARVAHEMAVKLGNEVGYAIRFEDCTSQRTRIKYMTDGTLHREFLSEPDLASYSV
MIIDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATLDATKFSEFFDEAPIFRIPGRR
FPVDIYYTKAPESDYIEACVVSIIQIHVTQPSGDILVFLTGQEEIETCQEMLQERVRRLG
SKLAELLILPVYANLPSDMQIKIFQPTPPGARKVVLATNIAETSLTIDNIVYVIDPGYAK
QNNFNPRTGMESLIVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYQHELEDNTVPEIQ
RINLGNAVLTLKALGIDDLMHFDFLDPPPPETLILAMEQLYALGALNHRGELTKLGRRMA
EFPLDPMMAKMLLASEKYRCSEEVATIAAMLSVNGAIFYRPKDKIIHADAARKNFHVPGG
DHLTLLNVYNQWAQSDFSTHWCYENFIQHRSMKRARDVREQLVGLMQRVEMELVSGIAET
VNIRKAITAGYFYHVARLSKGGCYKTAKHNQQVAIHPNSSLFQDLPRWLLYHELVLTTKE
FMRQVTEIESKWLLEVAPHYYKPKEIEDSTNKKMPKVAGRSRPDGTN
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtataggcgggaagagacatcgagcgaggatacggatagcgaggaggagcgt
cggaagaaggatatcaaggagagagacagttttgccaatcgtctcaaggagaaagatgag
agcaagaggcgcaacgtcgctatgccggctggttccggagctgccgaggcggcaaagaga
cttaaaattatggagactgacacgaaagacaagctgataccaaaattgagggtcgagtct
cgcaggaaatacttggagaaacgtaaagaggacaaggtcgcagagttggaggctgacatc
ctcgacgacgaatatctatttgacgaaaacattttaacggacaaagagaagcaagagaga
gcccataagaagcaattgttgcacctggcgaaggagcatgagaaagcgagggaactcgag
cgcatgcagcgctatcacatgcctcttgagaagggtaagactgaacaagaacttgatacg
acgacggacaaggaacctccgcaatcggagcaaagcaaatgggaatctgatcagatgtcg
tcggctgtttttcgctttggcgctaaagataggaaagctcaacaagaatataatctcctc
atggaggatgagatgatagagtttgttcaagtgctgcacatgccaggacacaaggataag
aaacgggaggaaagtccacccgcgcatgttaaaagtttgcagacgatacaggagacaaag
aagagtctgcctatttatccctttagaaaggatctgatacgagccattagagatcatcag
gttttgataatagaaggtgagacgggatcggggaagacaacgcagatcccacaatacctg
tacgaatctggatttgcggacgacggtaagattatcgggtgcacgcagccgcggcgagta
gcggccatgtcggtggctgcgagggtagcccacgaaatggctgtcaagctgggcaacgag
gtcggctatgccattcgtttcgaagattgcacgtcgcaacgtacccgcatcaaatatatg
accgatggtacgttgcaccgggagttcctcagcgaacctgatctagcgtcgtacagcgta
atgataatcgacgaggcgcacgaacgtactttacataccgacatattattcggactggtg
aaagatatcgcgagatttcgtcctgacctgaagctactgatatcgtcggctacactggat
gccacgaagtttagtgaattcttcgacgaagctcctatatttaggataccgggacgccgt
tttcctgttgacatctattacacaaaagcgccggaatcagattatatcgaggcgtgtgtg
gtctccattattcaaattcacgtaacgcagccgtcgggtgatatactggtattcttgact
gggcaagaggaaatcgagacgtgtcaggaaatgttacaggagagagtgagaagactgggg
agtaaattggcagaacttttgattttacctgtttacgcgaatctaccgagcgatatgcag
ataaaaatatttcaaccgactccacctggggcgagaaaggttgtactggcgactaatata
gcggagacttcattaactatagacaacatagtgtacgtgatagatcctggttatgcgaag
cagaataatttcaatccacgcactggcatggagagtttaatagtcgtgccgatcagcaaa
gcgtccgcgaatcaaagagcgggacgcgctggaagagtagcacctggaaagtgcttccgt
ttatacacagcttgggcttatcagcatgagcttgaagataacaccgtgcctgagattcaa
cggattaacttgggtaacgcagtacttactttgaaagctctcgggattgacgacttgatg
cactttgattttttggatcctccaccgcccgaaacactgatcttggcgatggaacagctg
tatgcattgggcgcgctgaatcatcgcggggaattgacaaaactcggacgtagaatggct
gagttcccgctggacccgatgatggcgaagatgctgttagccagcgaaaagtatcgctgc
tcggaagaggtggctactatcgcggctatgctttcggtcaacggcgctatcttttatagg
ccgaaggacaaaattatacatgcggatgctgcgcgcaagaatttccacgtacccggcggt
gatcatctgactcttcttaacgtgtacaatcaatgggcacagagtgacttcagtacgcat
tggtgttacgagaatttcatacagcacagatccatgaaacgggcgagggacgttagagaa
cagctagtaggcctgatgcagcgtgtcgagatggaattggtctcgggaattgcagaaaca
gtcaatattagaaaggctattacagctggttatttctatcacgttgcacgcttgtcgaag
ggaggttgttacaagaccgcaaagcataatcaacaagtcgcaatacatccaaatagctcc
ctattccaggaccttccgcgttggcttctttatcacgaacttgtactcactaccaaggaa
tttatgcgccaggtgactgaaatcgagagcaaatggctgctcgaagtggcgcctcattat
tacaagcctaaagaaatagaagattcaacgaacaaaaagatgccgaaagtagcgggcaga
tcacgaccagatggaacgaattaa
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