Vollenhovia emeryi: 105564766
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Entry
105564766 CDS
T06016
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
vem
Vollenhovia emeryi
Pathway
vem04512
ECM-receptor interaction
vem04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105564766
04518 Integrin signaling
105564766
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
vem00536
]
105564766
Glycosaminoglycan binding proteins [BR:
vem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105564766
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
105564766
NCBI-ProteinID:
XP_011872804
LinkDB
All DBs
Position
Unknown
AA seq
1512 aa
AA seq
DB search
MRRQALELITGLLVVQLLLLLPDQVNAVKNRLRKQRSKPQQHQAQQAGNDYEYDYYGNYD
EYEEKNETATTVPPLVLPSAVTRLSGLSETPTETFLRRETPTDLPAPTTTQFYDHERTSP
TSERDHSESTNYLVSSTEILPGESNIYSSVAIPGPRGAPGRPGDVGRPGDAGFPGQPGTP
GTPGSPGAPGPVPDVSLYYRQLALSQASEDKGPTGAAASLYGPETLPYIQAQVGPMGPRG
PPGPPGAPGPQGFQGTRGETGELGSSGPHGMPGPRGLPGLPGKDGVSGEDGETGPPGSPG
PVGPRGSPGIPGLPGLKGHRGFPGLDGAKGEQGALGEKGSMGSPGSMGPVGPMGPAGPRG
ERGREGPPGPPGLRGLDGIAGPPGQPGAIGKPGLPGFPGIPGVKGDQGVQGPTGSQGLQG
PRGESGRPGQPGETGPQGPQGKDGIPGETGVIGAIGPVGLPGFPGARGQPGTPGNSGVPG
AKGAPGLPGERGFKGDAGVKGDAGMPGPRGLPGPPGTEGKRGKRGMRGPIGAAGPPGERG
ALGARGLPGQDGPVGPQGQTGDRGFAGPVGPKGTAGDPGRPGPAGLQGARGLVGRPGAPG
KPGNPGERGIQGADGKPGEQGQSGLQGLPGPLGPTGERGYPGERGKDGEPGNPGPPGPRG
DIGKEGAPGTQGPPGPPGNDGVRGSPGSIGPRGFQGLPGVAGNPGVPGKDGEAGVQGRPG
PPGVIGNRGERGLPGERGLTGAPGSVGPRGETGESGADGLIGLPGLKGDKGSVGSPGLLG
LPGVRGLSGEPGQKGERGTPGPIGPEGPSGHIGERGLQGEVGPPGSPGEPAERGDPGPPG
SIGETGAPGNPGERGPHGLQGLQGFPGPQGLIGLPGLKGDRGYPGLKGEQGNLGLPGSRG
EAGLPGPIGLTGAKGIRGESGARGEPGLMGPPGITGHVGPSGPPGNVGPSGAPGLPGIKG
DTGDIGRPGNPGPMGNPGPPGIDGIKGESGSSGPQGPMGSQGPQGSPGERGTPGLPGSAG
PIGNRGLRGAPGETGQPGKPGTEGPAGPPGLIGPPGLPGHIGEAGPEGPIGKPGPPGIGG
RPGDKGPPGVPGATGSSGPPGIPGPLGPTGPTGLTGERGLKGETGPQGVEGPQGPRGKPG
PTGLEGTKGDRGEDGQKGAKGHRGFTGLQGLPGSPGLVGEKGIPGLAGSPGKDGEPGIRG
NPGREGNPGPIGPGGNPGPRGPPGEEGRHGLTGPAGPPGPPGPPGEVGFGYDAASLAALL
GQGQTKGPDPLGDEPPRMFGKDITEKERRELLLKAYENLKSSFQKLVKPDGEKNSPAKTC
RDLFIAYPDKLSGEYWIDPNEGDVRDAILVYCDAEKRATCILPNPSRLPEITHITDQQET
WLSEIDSGMKITYKADSNQIGFLQLLSKHANQNITYYCKNSVAYFDYEKKTYRKGLKFLA
WNDIELTPRGNQRLRYEMIMDECRVHQNHWGKTVISYETDKPVRLPILDVALRDIGKAEQ
SFSIEIGAACYD
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgagacggcaggctctagagctgatcacggggctcctcgtggtccagctgctgctgctc
ttgccggatcaagtgaacgccgtgaagaatcggttgaggaaacaacgatccaagccgcag
caacatcaagctcagcaagctggcaacgattatgaatatgattattacggcaactacgac
gaatacgaggaaaagaacgagacggcaacaacggtaccaccattagtgttgccatcagct
gtcacgcgactttcaggattgtccgaaacaccgacagaaacattcttgagacgagaaaca
cctacagacttaccggctcccacgacaactcaattttatgatcatgagaggaccagtccc
acatctgaacgggatcactcagaaagcacaaactatttggtttcatctactgaaatttta
ccaggtgagagtaacatatatagttccgtggctataccaggaccacgaggtgcacctgga
cgacctggagatgttggtcgtcctggtgatgcgggatttcctggacaaccaggtacacct
gggactcccggatcacctggcgctccaggacctgtacccgatgtatctctatattatcga
caattggctttgtctcaagcaagtgaagataaaggtccgacaggtgcagcggcgtcattg
tatggaccagagacattaccttacattcaggcacaagtaggcccgatgggtccgcgaggc
cctccaggtccgcctggtgctcctggtcctcaaggttttcaaggtacacgaggtgaaacc
ggtgaattgggttcctcaggccctcatggcatgccaggtcctaggggtttaccaggatta
cctggaaaggacggtgtcagtggagaagatggcgaaactggtccaccgggatcacctggt
cctgtagggccacgtggttctccagggatacctgggcttccagggttaaaaggtcatcgt
ggctttccaggtctggacggtgccaagggtgagcaaggagctcttggtgaaaaaggatct
atgggttcgcctgggtcgatggggccggtaggaccaatgggtccagcaggacctcgtggt
gaaagaggtagagaaggtccaccgggtccccctgggttgagaggcctcgatggaattgct
gggccgcctggacaacccggtgctatcggtaaacctggtttaccaggttttccaggcatt
cctggagttaaaggtgaccaaggagtgcaaggaccaacaggaagtcagggtttgcaaggt
ccgcgaggcgaaagtggccgcccaggacaacctggtgaaactggtccacaaggtcctcaa
ggcaaagatggaatacccggtgagacgggtgtcattggagcgataggacccgttggtctg
cccggttttccaggtgctcgaggtcaacccggcacaccgggcaattctggtgtccctggc
gctaaaggagcacctggccttcctggtgaaagaggttttaaaggagatgctggagtgaaa
ggtgatgcaggaatgcctggtccgcgtggacttccgggacctcctgggacagagggcaaa
aggggcaagagaggaatgcgtggaccaattggcgctgcaggaccgcctggagaacgtggc
gcacttggagctcgtggtcttcctggccaagatggtcctgtcgggcctcaagggcaaact
ggcgatcgtggttttgcgggacctgttggaccgaaaggcaccgctggagatcctggacga
cctggacctgcaggattacagggtgcacgtggtttagtgggtaggcccggagctcctggg
aaaccaggcaatcctggagaacgtggaattcaaggtgcggatggtaagcctggagaacaa
ggacaatctggactgcagggtctaccaggaccgttaggaccaacaggggagagaggctat
cctggagaacgaggaaaagatggtgagccaggcaatccaggtcctcctggtccgagagga
gatatcggtaaagaaggagctccaggaacacagggtccaccaggtccaccgggaaatgat
ggcgtgcgaggttctccgggatctataggtcctagaggttttcaaggtcttccaggagtt
gccggtaatccgggtgttccaggcaaggacggagaagcaggagtacaaggacgtcccggt
ccgccgggagtaatcggcaatagaggcgagcgaggacttccgggagaaagaggactcacg
ggagctcctggatctgtgggtcctagaggagaaaccggggaatctggtgctgatggtcta
attggtttaccaggacttaaaggagataaaggaagtgttggttcaccgggattactagga
cttcctggtgtgagaggattatccggagaacctggacagaaaggagagaggggtacacct
ggaccaatcggccccgaaggtccatcaggacatattggagagcgtggtctacaaggagaa
gttggacctcctggctctcccggagaaccagctgaacgaggcgatccaggtcctcctggt
tctattggagagaccggcgcacctggaaatccaggagagagaggacctcatggattacag
ggcttgcaaggttttccaggtccacaaggattaattggacttcctggtctgaaaggcgat
cgcggttatccgggtttaaaaggagaacaaggaaatctgggacttcctggcagtcgcggc
gaagccggattacctggaccaattggacttaccggtgctaagggaattagaggtgaatct
ggtgcacgaggtgaacctggtttaatggggccacctggtatcacgggacatgttggacca
tcaggacccccaggaaatgtgggaccatctggtgctcctggattgcccggtattaaaggc
gacactggcgatattggacgtccgggaaatccaggtccgatgggtaaccctggtccacct
ggaatagatggaattaaaggcgaaagcggatcctcaggtcctcaggggccgatgggttct
caaggaccacaaggttcgcctggcgagagaggaacaccaggtttacctggttctgctggt
cctataggaaacagaggattacgcggagctcccggtgaaacggggcaacctggaaaacca
ggaacggaaggtccagccggacctcccgggttgataggccctccaggtcttcctggacat
ataggagaagcagggccggaaggaccaattggaaaaccaggacccccaggtataggaggt
cgaccaggtgataaaggaccgcctggagtacctggtgctacagggtcgtcaggacctcct
ggaataccaggaccacttggacctactggacctaccggacttactggagaacgtggcttg
aaaggtgaaacaggaccgcaaggtgtggaaggtccacagggaccacgagggaaacctggc
cctacaggtcttgaaggtacgaaaggggatcgtggagaagatgggcagaaaggggccaag
ggacatcgaggatttactggtttacaaggtttacctgggtctcctggtttagtaggagaa
aaaggtatacctggtttggcaggatctcctggtaaagacggagagccaggtattagaggt
aatcctggacgggagggcaatccaggacctatcggacctggaggtaatcccggacccaga
ggtccacctggggaagaaggtcgacatggactaacgggtcctgcaggaccacctggacct
cctggtcctcctggagaagtaggtttcggttacgatgctgcatctctagcagcgcttcta
gggcaaggccaaactaaaggaccagatccacttggtgatgaaccgccaagaatgtttggt
aaagatatcaccgaaaaagaacgaagagaattacttttgaaggcttacgagaatctaaaa
tcgtcgttccaaaaattagtgaagccagatggtgaaaagaattcgcctgctaaaacctgt
cgagatctatttattgcttacccggacaaattatctggcgagtactggattgatccaaac
gaaggagatgttcgagacgcgatcttggtgtattgcgatgctgagaagcgtgcaacttgt
attctaccgaatccatcgcgtttaccagaaatcactcacatcactgatcaacaggagacc
tggctaagcgagatagatagcggcatgaagattacatacaaggcagacagtaatcaaatc
ggtttcttgcaattgctctcgaaacacgcgaatcagaacatcacgtattattgcaaaaat
agtgtggcctacttcgattacgagaaaaagacatacagaaagggtttgaagtttttggct
tggaatgacattgaattgacaccacgaggcaatcagcgtcttagatatgagatgataatg
gatgaatgcagggtccatcaaaatcattggggtaaaactgttatttcatacgaaacggac
aaacctgtgagacttcctatcttagacgtggctttgcgagatatcggaaaagccgaacag
agcttttccatagagattggtgcagcttgttacgattaa
DBGET
integrated database retrieval system
